miRNA display CGI


Results 1 - 20 of 57 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19224 5' -62.7 NC_004684.1 + 1997 0.66 0.402923
Target:  5'- cGCGUUcUGGCagCGCCuggGUGGgGGUCCGc -3'
miRNA:   3'- uCGCAGaACCG--GCGG---CACCaCCGGGC- -5'
19224 5' -62.7 NC_004684.1 + 2043 0.66 0.402923
Target:  5'- uGGUGgccCUgggGGCCGCCaucGUGGCCUGc -3'
miRNA:   3'- -UCGCa--GAa--CCGGCGGcacCACCGGGC- -5'
19224 5' -62.7 NC_004684.1 + 3631 0.69 0.273646
Target:  5'- uGCuGUCggccgcaaacuagUGGCCGCCcgGUgccgggucaucguacGGUGGCCCGg -3'
miRNA:   3'- uCG-CAGa------------ACCGGCGG--CA---------------CCACCGGGC- -5'
19224 5' -62.7 NC_004684.1 + 6845 0.68 0.293805
Target:  5'- cGGCG-CgaagGGCgaCGCCGUGGUGGUgCu -3'
miRNA:   3'- -UCGCaGaa--CCG--GCGGCACCACCGgGc -5'
19224 5' -62.7 NC_004684.1 + 7221 0.66 0.402923
Target:  5'- cGCGUC-UGGgaGCgCGUggaGGUGuGCCCGg -3'
miRNA:   3'- uCGCAGaACCggCG-GCA---CCAC-CGGGC- -5'
19224 5' -62.7 NC_004684.1 + 11759 0.66 0.411641
Target:  5'- uGGCaUC-UGGuucuCCGgUGUGGUGGCCCc -3'
miRNA:   3'- -UCGcAGaACC----GGCgGCACCACCGGGc -5'
19224 5' -62.7 NC_004684.1 + 12057 0.7 0.230939
Target:  5'- aGGCGgCUcgccUGGCCGCCGagcgcgacgaggUGcUGGCCCGc -3'
miRNA:   3'- -UCGCaGA----ACCGGCGGC------------ACcACCGGGC- -5'
19224 5' -62.7 NC_004684.1 + 13270 0.71 0.184428
Target:  5'- cAGCGcgCUggUGGCCGCCGguggcUGGUGcGCgCCGu -3'
miRNA:   3'- -UCGCa-GA--ACCGGCGGC-----ACCAC-CG-GGC- -5'
19224 5' -62.7 NC_004684.1 + 14480 0.66 0.377482
Target:  5'- uGCGgccacGCCGCCGUGcUGGCCgGa -3'
miRNA:   3'- uCGCagaacCGGCGGCACcACCGGgC- -5'
19224 5' -62.7 NC_004684.1 + 14825 0.66 0.394322
Target:  5'- uGUGg---GGCgCGCCGUGGUGcgucGCCCc -3'
miRNA:   3'- uCGCagaaCCG-GCGGCACCAC----CGGGc -5'
19224 5' -62.7 NC_004684.1 + 15089 0.68 0.293805
Target:  5'- cGGCGcggUGGCCGCCcUGGaGGCCg- -3'
miRNA:   3'- -UCGCagaACCGGCGGcACCaCCGGgc -5'
19224 5' -62.7 NC_004684.1 + 16566 0.67 0.359525
Target:  5'- gGGCGUCaucgugaacgcgUGGuaCCGCCGccagcgucugcUGGUGGCCUc -3'
miRNA:   3'- -UCGCAGa-----------ACC--GGCGGC-----------ACCACCGGGc -5'
19224 5' -62.7 NC_004684.1 + 19480 0.67 0.329938
Target:  5'- aGGUGgcCgaGGCCGCCGaccGUGGCCUGc -3'
miRNA:   3'- -UCGCa-GaaCCGGCGGCac-CACCGGGC- -5'
19224 5' -62.7 NC_004684.1 + 24526 0.66 0.420475
Target:  5'- gGGCGUgc-GGCgGCC-UGGuUGGCCCc -3'
miRNA:   3'- -UCGCAgaaCCGgCGGcACC-ACCGGGc -5'
19224 5' -62.7 NC_004684.1 + 25062 0.68 0.307876
Target:  5'- aGGUGgccagGGCgGCCGgguUGGUGGCCuCGa -3'
miRNA:   3'- -UCGCagaa-CCGgCGGC---ACCACCGG-GC- -5'
19224 5' -62.7 NC_004684.1 + 25233 0.67 0.322457
Target:  5'- cGGCGcUCUcgacccauaGGCCGUgCGUGGUGGCgUCGg -3'
miRNA:   3'- -UCGC-AGAa--------CCGGCG-GCACCACCG-GGC- -5'
19224 5' -62.7 NC_004684.1 + 25330 0.67 0.361133
Target:  5'- cGGCGUa-UGGCgGCCuccccGGUGGCCUu -3'
miRNA:   3'- -UCGCAgaACCGgCGGca---CCACCGGGc -5'
19224 5' -62.7 NC_004684.1 + 25564 0.71 0.179804
Target:  5'- cGCGUCggUGGCCagcGCCuccgGGUGGUCCa -3'
miRNA:   3'- uCGCAGa-ACCGG---CGGca--CCACCGGGc -5'
19224 5' -62.7 NC_004684.1 + 25713 0.66 0.420475
Target:  5'- cGCG-CUgGGUguUGCCGaGGUcGGCCCGg -3'
miRNA:   3'- uCGCaGAaCCG--GCGGCaCCA-CCGGGC- -5'
19224 5' -62.7 NC_004684.1 + 26427 0.72 0.154169
Target:  5'- cAGCGg---GGuUCGCCGccGGUGGCCCGg -3'
miRNA:   3'- -UCGCagaaCC-GGCGGCa-CCACCGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.