miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19227 3' -58.9 NC_004684.1 + 1482 0.66 0.579872
Target:  5'- gUGCcCGguGCGGCGGCCcUgGUGGCCa- -3'
miRNA:   3'- -AUGaGC--UGCCGCCGGaGgUACUGGag -5'
19227 3' -58.9 NC_004684.1 + 41579 0.66 0.579872
Target:  5'- uUGCuUCGGCGGCGGCauuUCC-UGGCg-- -3'
miRNA:   3'- -AUG-AGCUGCCGCCGg--AGGuACUGgag -5'
19227 3' -58.9 NC_004684.1 + 4915 0.66 0.569309
Target:  5'- gUGCUCGA-GGCGGUCgCCAacGGCCa- -3'
miRNA:   3'- -AUGAGCUgCCGCCGGaGGUa-CUGGag -5'
19227 3' -58.9 NC_004684.1 + 61802 0.66 0.569309
Target:  5'- cGCggUGGCGaaGGCCUCCAUGGCg-- -3'
miRNA:   3'- aUGa-GCUGCcgCCGGAGGUACUGgag -5'
19227 3' -58.9 NC_004684.1 + 57062 0.66 0.569309
Target:  5'- gGgUCGAUGGCGGCCUgCGUuGCg-- -3'
miRNA:   3'- aUgAGCUGCCGCCGGAgGUAcUGgag -5'
19227 3' -58.9 NC_004684.1 + 29300 0.66 0.569309
Target:  5'- aACUcCGACGGCGGugguuuguacCCgucgCCGuugagcuucuUGGCCUCg -3'
miRNA:   3'- aUGA-GCUGCCGCC----------GGa---GGU----------ACUGGAG- -5'
19227 3' -58.9 NC_004684.1 + 66622 0.66 0.569309
Target:  5'- aGCUUGGUGccuGCGGCCUUgGUGGCCa- -3'
miRNA:   3'- aUGAGCUGC---CGCCGGAGgUACUGGag -5'
19227 3' -58.9 NC_004684.1 + 45338 0.66 0.569309
Target:  5'- cAC-CGGCGGgGGUCUCCA--GCCa- -3'
miRNA:   3'- aUGaGCUGCCgCCGGAGGUacUGGag -5'
19227 3' -58.9 NC_004684.1 + 60244 0.66 0.558796
Target:  5'- cGCa-GGCGGUGGCCaccuUCCGggUGuACCUCg -3'
miRNA:   3'- aUGagCUGCCGCCGG----AGGU--AC-UGGAG- -5'
19227 3' -58.9 NC_004684.1 + 13950 0.66 0.558796
Target:  5'- cACUCG-CGGgGGgcCCUCgGUGACgUCc -3'
miRNA:   3'- aUGAGCuGCCgCC--GGAGgUACUGgAG- -5'
19227 3' -58.9 NC_004684.1 + 33948 0.66 0.558796
Target:  5'- -cCUCGACagauaGGauCGGCC-CCAUGGCCgUCg -3'
miRNA:   3'- auGAGCUG-----CC--GCCGGaGGUACUGG-AG- -5'
19227 3' -58.9 NC_004684.1 + 57572 0.66 0.557747
Target:  5'- gGCaaGACGGUGGCCUugagcgucgggugCCAccggcgcagGGCCUCg -3'
miRNA:   3'- aUGagCUGCCGCCGGA-------------GGUa--------CUGGAG- -5'
19227 3' -58.9 NC_004684.1 + 62902 0.66 0.53794
Target:  5'- aGCUCGGCGggguuacgguaGCGGCCaaCGacGGCCUCg -3'
miRNA:   3'- aUGAGCUGC-----------CGCCGGagGUa-CUGGAG- -5'
19227 3' -58.9 NC_004684.1 + 58591 0.66 0.53794
Target:  5'- -uCUUGAUGGCaaCCUCgGUGACCUg -3'
miRNA:   3'- auGAGCUGCCGccGGAGgUACUGGAg -5'
19227 3' -58.9 NC_004684.1 + 63476 0.66 0.53794
Target:  5'- cAUUCGGgGGCgcgaGGCCUCCAgcUGcGCCUg -3'
miRNA:   3'- aUGAGCUgCCG----CCGGAGGU--AC-UGGAg -5'
19227 3' -58.9 NC_004684.1 + 65603 0.66 0.527613
Target:  5'- aGC-CGcACGGCGGCgUCCugguUGGCgUCc -3'
miRNA:   3'- aUGaGC-UGCCGCCGgAGGu---ACUGgAG- -5'
19227 3' -58.9 NC_004684.1 + 40706 0.66 0.527613
Target:  5'- aGCUgGGCGGCGGUggCCGggacGACCa- -3'
miRNA:   3'- aUGAgCUGCCGCCGgaGGUa---CUGGag -5'
19227 3' -58.9 NC_004684.1 + 45157 0.66 0.527613
Target:  5'- aAgUCGACGGCGuCCUCCAgGuCCa- -3'
miRNA:   3'- aUgAGCUGCCGCcGGAGGUaCuGGag -5'
19227 3' -58.9 NC_004684.1 + 19685 0.66 0.526584
Target:  5'- gGCgCGGCGGCaaggccuGGCCgagCCAaGACCUg -3'
miRNA:   3'- aUGaGCUGCCG-------CCGGa--GGUaCUGGAg -5'
19227 3' -58.9 NC_004684.1 + 46590 0.67 0.51736
Target:  5'- cGCUCGACGGCGGCgaCgGcGGCg-- -3'
miRNA:   3'- aUGAGCUGCCGCCGgaGgUaCUGgag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.