miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19228 3' -65.1 NC_004684.1 + 46907 1.09 0.000174
Target:  5'- cCCCGCCGCAUCCCCCAGGACCGGCCAa -3'
miRNA:   3'- -GGGCGGCGUAGGGGGUCCUGGCCGGU- -5'
19228 3' -65.1 NC_004684.1 + 59824 0.76 0.059174
Target:  5'- aCCaGCCGCAccagcgCCaCCCGGGGCCGGuCCAg -3'
miRNA:   3'- gGG-CGGCGUa-----GG-GGGUCCUGGCC-GGU- -5'
19228 3' -65.1 NC_004684.1 + 36749 0.72 0.114259
Target:  5'- uCCCGgCGCugacgCCgCCAGGGCCGcGCCc -3'
miRNA:   3'- -GGGCgGCGua---GGgGGUCCUGGC-CGGu -5'
19228 3' -65.1 NC_004684.1 + 27025 0.72 0.117251
Target:  5'- aCCGCCGaggCCCCCAaGGCCaaGGCCGc -3'
miRNA:   3'- gGGCGGCguaGGGGGUcCUGG--CCGGU- -5'
19228 3' -65.1 NC_004684.1 + 64669 0.72 0.133335
Target:  5'- gCCGUgcgguguggCGCAcuugCCCCCGGcACCGGCCAg -3'
miRNA:   3'- gGGCG---------GCGUa---GGGGGUCcUGGCCGGU- -5'
19228 3' -65.1 NC_004684.1 + 17556 0.72 0.133335
Target:  5'- uCCCGCCGUccucgcGUCCCgaGGGACCguaugugauGGCCGg -3'
miRNA:   3'- -GGGCGGCG------UAGGGggUCCUGG---------CCGGU- -5'
19228 3' -65.1 NC_004684.1 + 17338 0.71 0.143939
Target:  5'- gCUCGaCCGguUCCUggccuggagCCAGGcACCGGCCAc -3'
miRNA:   3'- -GGGC-GGCguAGGG---------GGUCC-UGGCCGGU- -5'
19228 3' -65.1 NC_004684.1 + 18334 0.71 0.155308
Target:  5'- gCCGgUGCcgCCCCCGGagccGACCGGCg- -3'
miRNA:   3'- gGGCgGCGuaGGGGGUC----CUGGCCGgu -5'
19228 3' -65.1 NC_004684.1 + 15165 0.7 0.167484
Target:  5'- gCCGCCGCcgCCacgcaCCUGGGACUGGUg- -3'
miRNA:   3'- gGGCGGCGuaGG-----GGGUCCUGGCCGgu -5'
19228 3' -65.1 NC_004684.1 + 16525 0.7 0.167484
Target:  5'- -gCGCCGCAgUCCUgGGGugUGGCCu -3'
miRNA:   3'- ggGCGGCGUaGGGGgUCCugGCCGGu -5'
19228 3' -65.1 NC_004684.1 + 12942 0.7 0.171729
Target:  5'- gCCGCCGuCGgcaCCCCCGGugcucccgccGACCGGCg- -3'
miRNA:   3'- gGGCGGC-GUa--GGGGGUC----------CUGGCCGgu -5'
19228 3' -65.1 NC_004684.1 + 47609 0.7 0.17607
Target:  5'- gCCCGCCaucuuGUcgCCCCCggcGGGcACCGGCa- -3'
miRNA:   3'- -GGGCGG-----CGuaGGGGG---UCC-UGGCCGgu -5'
19228 3' -65.1 NC_004684.1 + 18217 0.7 0.17607
Target:  5'- gCCGCCGCcgCCgCCGaGACUGcGCCGu -3'
miRNA:   3'- gGGCGGCGuaGGgGGUcCUGGC-CGGU- -5'
19228 3' -65.1 NC_004684.1 + 9568 0.7 0.180508
Target:  5'- gCgGCCaGCA-CCgCCGGGACCaGGCCGu -3'
miRNA:   3'- gGgCGG-CGUaGGgGGUCCUGG-CCGGU- -5'
19228 3' -65.1 NC_004684.1 + 58425 0.7 0.185045
Target:  5'- cCCCGCCGguUgCCUCCGGccCCGuGCCGg -3'
miRNA:   3'- -GGGCGGCguA-GGGGGUCcuGGC-CGGU- -5'
19228 3' -65.1 NC_004684.1 + 45047 0.69 0.189683
Target:  5'- gCCGCCGCcgCCaccgccuguaCCGGGugGCgGGCCAc -3'
miRNA:   3'- gGGCGGCGuaGGg---------GGUCC--UGgCCGGU- -5'
19228 3' -65.1 NC_004684.1 + 39637 0.69 0.189683
Target:  5'- uCgCGCgGCAcggucaCCUCCAGGuACCGGCCu -3'
miRNA:   3'- -GgGCGgCGUa-----GGGGGUCC-UGGCCGGu -5'
19228 3' -65.1 NC_004684.1 + 43414 0.69 0.189683
Target:  5'- gCCGCCGCcgaaCCCgAGGcCCGGCgAg -3'
miRNA:   3'- gGGCGGCGuag-GGGgUCCuGGCCGgU- -5'
19228 3' -65.1 NC_004684.1 + 31297 0.69 0.194422
Target:  5'- aCCGCCGUA--CCUCGGuGACCGGgCAg -3'
miRNA:   3'- gGGCGGCGUagGGGGUC-CUGGCCgGU- -5'
19228 3' -65.1 NC_004684.1 + 41409 0.69 0.203713
Target:  5'- aCCGUCGCgguggcGUCCCCCGuggcgguGGugCGGCg- -3'
miRNA:   3'- gGGCGGCG------UAGGGGGU-------CCugGCCGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.