miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19228 3' -65.1 NC_004684.1 + 54050 0.67 0.291846
Target:  5'- gCCCGCCGUAggguuaCCagguuuaCCGGGugCGGUg- -3'
miRNA:   3'- -GGGCGGCGUa-----GGg------GGUCCugGCCGgu -5'
19228 3' -65.1 NC_004684.1 + 65973 0.69 0.209266
Target:  5'- aCCUugGCCcgGCAggCCUCCAGGucGCUGGCCAg -3'
miRNA:   3'- -GGG--CGG--CGUa-GGGGGUCC--UGGCCGGU- -5'
19228 3' -65.1 NC_004684.1 + 2687 0.68 0.247722
Target:  5'- gCCGggcaCCGCAUCCCC--GGcCUGGCCGg -3'
miRNA:   3'- gGGC----GGCGUAGGGGguCCuGGCCGGU- -5'
19228 3' -65.1 NC_004684.1 + 45159 0.67 0.26592
Target:  5'- gUCGaCgGCGUCCUCCAGGuccaugaagUCGGCCAc -3'
miRNA:   3'- gGGC-GgCGUAGGGGGUCCu--------GGCCGGU- -5'
19228 3' -65.1 NC_004684.1 + 23926 0.67 0.272221
Target:  5'- gCUCGCUGCAUUCCCgGagcugcgcGGACCcGCCu -3'
miRNA:   3'- -GGGCGGCGUAGGGGgU--------CCUGGcCGGu -5'
19228 3' -65.1 NC_004684.1 + 11993 0.67 0.277995
Target:  5'- aCCGaCgGCAUgaCCCCgCAGGACUucgcggcggcgguGGCCAa -3'
miRNA:   3'- gGGC-GgCGUA--GGGG-GUCCUGG-------------CCGGU- -5'
19228 3' -65.1 NC_004684.1 + 9868 0.67 0.278643
Target:  5'- gCCGCCGgAUCCCgacgccgcgCAGGAgCaGGCCGc -3'
miRNA:   3'- gGGCGGCgUAGGGg--------GUCCUgG-CCGGU- -5'
19228 3' -65.1 NC_004684.1 + 51154 0.67 0.285184
Target:  5'- gCCGCCGa--CUCCUcGGugUGGCCGa -3'
miRNA:   3'- gGGCGGCguaGGGGGuCCugGCCGGU- -5'
19228 3' -65.1 NC_004684.1 + 61321 0.67 0.285184
Target:  5'- gCCggGCCGCcgCCCUCGGcGGCguagguggCGGCCAg -3'
miRNA:   3'- gGG--CGGCGuaGGGGGUC-CUG--------GCCGGU- -5'
19228 3' -65.1 NC_004684.1 + 52885 0.69 0.204212
Target:  5'- gCCgGUgGCAgcaCCCAGGAgcguCCGGCCAg -3'
miRNA:   3'- -GGgCGgCGUaggGGGUCCU----GGCCGGU- -5'
19228 3' -65.1 NC_004684.1 + 41409 0.69 0.203713
Target:  5'- aCCGUCGCgguggcGUCCCCCGuggcgguGGugCGGCg- -3'
miRNA:   3'- gGGCGGCG------UAGGGGGU-------CCugGCCGgu -5'
19228 3' -65.1 NC_004684.1 + 31297 0.69 0.194422
Target:  5'- aCCGCCGUA--CCUCGGuGACCGGgCAg -3'
miRNA:   3'- gGGCGGCGUagGGGGUC-CUGGCCgGU- -5'
19228 3' -65.1 NC_004684.1 + 36749 0.72 0.114259
Target:  5'- uCCCGgCGCugacgCCgCCAGGGCCGcGCCc -3'
miRNA:   3'- -GGGCgGCGua---GGgGGUCCUGGC-CGGu -5'
19228 3' -65.1 NC_004684.1 + 18334 0.71 0.155308
Target:  5'- gCCGgUGCcgCCCCCGGagccGACCGGCg- -3'
miRNA:   3'- gGGCgGCGuaGGGGGUC----CUGGCCGgu -5'
19228 3' -65.1 NC_004684.1 + 16525 0.7 0.167484
Target:  5'- -gCGCCGCAgUCCUgGGGugUGGCCu -3'
miRNA:   3'- ggGCGGCGUaGGGGgUCCugGCCGGu -5'
19228 3' -65.1 NC_004684.1 + 15165 0.7 0.167484
Target:  5'- gCCGCCGCcgCCacgcaCCUGGGACUGGUg- -3'
miRNA:   3'- gGGCGGCGuaGG-----GGGUCCUGGCCGgu -5'
19228 3' -65.1 NC_004684.1 + 12942 0.7 0.171729
Target:  5'- gCCGCCGuCGgcaCCCCCGGugcucccgccGACCGGCg- -3'
miRNA:   3'- gGGCGGC-GUa--GGGGGUC----------CUGGCCGgu -5'
19228 3' -65.1 NC_004684.1 + 58425 0.7 0.185045
Target:  5'- cCCCGCCGguUgCCUCCGGccCCGuGCCGg -3'
miRNA:   3'- -GGGCGGCguA-GGGGGUCcuGGC-CGGU- -5'
19228 3' -65.1 NC_004684.1 + 39637 0.69 0.189683
Target:  5'- uCgCGCgGCAcggucaCCUCCAGGuACCGGCCu -3'
miRNA:   3'- -GgGCGgCGUa-----GGGGGUCC-UGGCCGGu -5'
19228 3' -65.1 NC_004684.1 + 43414 0.69 0.189683
Target:  5'- gCCGCCGCcgaaCCCgAGGcCCGGCgAg -3'
miRNA:   3'- gGGCGGCGuag-GGGgUCCuGGCCGgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.