miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19228 3' -65.1 NC_004684.1 + 862 0.68 0.219697
Target:  5'- aCCGCCGUG-CCCgCCGGG-CCGcGCUg -3'
miRNA:   3'- gGGCGGCGUaGGG-GGUCCuGGC-CGGu -5'
19228 3' -65.1 NC_004684.1 + 2033 0.67 0.278643
Target:  5'- aCCGUCGCccugguggCCCUgGGGGCC-GCCAu -3'
miRNA:   3'- gGGCGGCGua------GGGGgUCCUGGcCGGU- -5'
19228 3' -65.1 NC_004684.1 + 2687 0.68 0.247722
Target:  5'- gCCGggcaCCGCAUCCCC--GGcCUGGCCGg -3'
miRNA:   3'- gGGC----GGCGUAGGGGguCCuGGCCGGU- -5'
19228 3' -65.1 NC_004684.1 + 4391 0.67 0.272221
Target:  5'- uCCUGCgcauCGCGUUCCCgGccACCGGCCAc -3'
miRNA:   3'- -GGGCG----GCGUAGGGGgUccUGGCCGGU- -5'
19228 3' -65.1 NC_004684.1 + 5749 0.66 0.341125
Target:  5'- uUCGCCGaCA-CCUCCGGGggguucgACUGGCCc -3'
miRNA:   3'- gGGCGGC-GUaGGGGGUCC-------UGGCCGGu -5'
19228 3' -65.1 NC_004684.1 + 7506 0.68 0.246547
Target:  5'- gCCGCCGCAUCgggguggaccugCCCGGcaccGACCuGGCCGc -3'
miRNA:   3'- gGGCGGCGUAGg-----------GGGUC----CUGG-CCGGU- -5'
19228 3' -65.1 NC_004684.1 + 9272 0.67 0.291846
Target:  5'- gCCgGUCGCGUUgUUCGcGGACCcGGCCAu -3'
miRNA:   3'- -GGgCGGCGUAGgGGGU-CCUGG-CCGGU- -5'
19228 3' -65.1 NC_004684.1 + 9568 0.7 0.180508
Target:  5'- gCgGCCaGCA-CCgCCGGGACCaGGCCGu -3'
miRNA:   3'- gGgCGG-CGUaGGgGGUCCUGG-CCGGU- -5'
19228 3' -65.1 NC_004684.1 + 9868 0.67 0.278643
Target:  5'- gCCGCCGgAUCCCgacgccgcgCAGGAgCaGGCCGc -3'
miRNA:   3'- gGGCGGCgUAGGGg--------GUCCUgG-CCGGU- -5'
19228 3' -65.1 NC_004684.1 + 10375 0.66 0.298629
Target:  5'- aUCGCgCGCA-CCgCCGGGuACCaGGCCGc -3'
miRNA:   3'- gGGCG-GCGUaGGgGGUCC-UGG-CCGGU- -5'
19228 3' -65.1 NC_004684.1 + 10687 0.67 0.285184
Target:  5'- aCCGCCaGCuucaCCCCCGGGcCCaGCUu -3'
miRNA:   3'- gGGCGG-CGua--GGGGGUCCuGGcCGGu -5'
19228 3' -65.1 NC_004684.1 + 11993 0.67 0.277995
Target:  5'- aCCGaCgGCAUgaCCCCgCAGGACUucgcggcggcgguGGCCAa -3'
miRNA:   3'- gGGC-GgCGUA--GGGG-GUCCUGG-------------CCGGU- -5'
19228 3' -65.1 NC_004684.1 + 12207 0.67 0.272221
Target:  5'- gCCGCCGCcagcggugcGUUCUCCGGGGgugcuuCCGGCa- -3'
miRNA:   3'- gGGCGGCG---------UAGGGGGUCCU------GGCCGgu -5'
19228 3' -65.1 NC_004684.1 + 12806 0.66 0.319707
Target:  5'- cCCCGCCGaCGacgCgCCCgAGGACggCGGCUc -3'
miRNA:   3'- -GGGCGGC-GUa--G-GGGgUCCUG--GCCGGu -5'
19228 3' -65.1 NC_004684.1 + 12942 0.7 0.171729
Target:  5'- gCCGCCGuCGgcaCCCCCGGugcucccgccGACCGGCg- -3'
miRNA:   3'- gGGCGGC-GUa--GGGGGUC----------CUGGCCGgu -5'
19228 3' -65.1 NC_004684.1 + 13565 0.66 0.329919
Target:  5'- aUCgGCUacugcgucgaggcggGCAUUCUCCAGGACCagggcuGGCCGg -3'
miRNA:   3'- -GGgCGG---------------CGUAGGGGGUCCUGG------CCGGU- -5'
19228 3' -65.1 NC_004684.1 + 15165 0.7 0.167484
Target:  5'- gCCGCCGCcgCCacgcaCCUGGGACUGGUg- -3'
miRNA:   3'- gGGCGGCGuaGG-----GGGUCCUGGCCGgu -5'
19228 3' -65.1 NC_004684.1 + 15732 0.68 0.253671
Target:  5'- gCUCGUgGCgaGUUgCCCAGcGACUGGCCGc -3'
miRNA:   3'- -GGGCGgCG--UAGgGGGUC-CUGGCCGGU- -5'
19228 3' -65.1 NC_004684.1 + 15970 0.67 0.272221
Target:  5'- cCCCGaacuccaGCAguUCCCCaAGGAcgcCCGGCCGa -3'
miRNA:   3'- -GGGCgg-----CGU--AGGGGgUCCU---GGCCGGU- -5'
19228 3' -65.1 NC_004684.1 + 16525 0.7 0.167484
Target:  5'- -gCGCCGCAgUCCUgGGGugUGGCCu -3'
miRNA:   3'- ggGCGGCGUaGGGGgUCCugGCCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.