miRNA display CGI


Results 1 - 20 of 88 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19229 3' -55.7 NC_004684.1 + 48461 1.12 0.000813
Target:  5'- gGCCGAGUUCUCCUCGACCGACAGCGCc -3'
miRNA:   3'- -CGGCUCAAGAGGAGCUGGCUGUCGCG- -5'
19229 3' -55.7 NC_004684.1 + 60566 0.8 0.140801
Target:  5'- cGCCGuAGgccagCUCCUCcaGGCCGACGGCGUc -3'
miRNA:   3'- -CGGC-UCaa---GAGGAG--CUGGCUGUCGCG- -5'
19229 3' -55.7 NC_004684.1 + 63148 0.77 0.237621
Target:  5'- gGCCGAGUgcggCUCCUgCGcGCCGcGCAGgCGCa -3'
miRNA:   3'- -CGGCUCAa---GAGGA-GC-UGGC-UGUC-GCG- -5'
19229 3' -55.7 NC_004684.1 + 20606 0.74 0.334668
Target:  5'- cGCCGAGcgUCUaCCUgGgcACCGGCgAGCGCc -3'
miRNA:   3'- -CGGCUCa-AGA-GGAgC--UGGCUG-UCGCG- -5'
19229 3' -55.7 NC_004684.1 + 60447 0.74 0.334668
Target:  5'- cGCCGGGUUCgaCCUCGGCCaGCAugccGgGCa -3'
miRNA:   3'- -CGGCUCAAGa-GGAGCUGGcUGU----CgCG- -5'
19229 3' -55.7 NC_004684.1 + 6515 0.74 0.348252
Target:  5'- gGCCGAGgaggugcgcaucgcgCUCC-CGGCCGACAuCGCc -3'
miRNA:   3'- -CGGCUCaa-------------GAGGaGCUGGCUGUcGCG- -5'
19229 3' -55.7 NC_004684.1 + 37200 0.74 0.35069
Target:  5'- cGCCGGGUUUgguggCCaccagcUCGccGCCGACGGCGUu -3'
miRNA:   3'- -CGGCUCAAGa----GG------AGC--UGGCUGUCGCG- -5'
19229 3' -55.7 NC_004684.1 + 62577 0.73 0.358902
Target:  5'- gGCCGAGcUUgUCCUCGAUCuGC-GCGCc -3'
miRNA:   3'- -CGGCUC-AAgAGGAGCUGGcUGuCGCG- -5'
19229 3' -55.7 NC_004684.1 + 59472 0.73 0.375728
Target:  5'- uGCCuGGGUUCUCCacCGGCUGGCuGGCGg -3'
miRNA:   3'- -CGG-CUCAAGAGGa-GCUGGCUG-UCGCg -5'
19229 3' -55.7 NC_004684.1 + 61415 0.73 0.384337
Target:  5'- gGCCGGGacUUCgCUCGGCCGGucgcucacCGGCGCg -3'
miRNA:   3'- -CGGCUCaaGAG-GAGCUGGCU--------GUCGCG- -5'
19229 3' -55.7 NC_004684.1 + 27261 0.73 0.393077
Target:  5'- cGCCGAGgUCggugCCgaGGCCGcCAGCGCc -3'
miRNA:   3'- -CGGCUCaAGa---GGagCUGGCuGUCGCG- -5'
19229 3' -55.7 NC_004684.1 + 45750 0.73 0.401945
Target:  5'- cGCCGAGagcgcCUgCUCGGuuGGCAGgCGCa -3'
miRNA:   3'- -CGGCUCaa---GAgGAGCUggCUGUC-GCG- -5'
19229 3' -55.7 NC_004684.1 + 27087 0.73 0.401945
Target:  5'- uGCCGGGcgCUacgCCaUCGACaccaaCGACGGCGCg -3'
miRNA:   3'- -CGGCUCaaGA---GG-AGCUG-----GCUGUCGCG- -5'
19229 3' -55.7 NC_004684.1 + 18333 0.72 0.420057
Target:  5'- cGCCG-GUgccgCccCCggagcCGACCGGCGGCGCg -3'
miRNA:   3'- -CGGCuCAa---Ga-GGa----GCUGGCUGUCGCG- -5'
19229 3' -55.7 NC_004684.1 + 53657 0.72 0.438654
Target:  5'- aCCGAGgugguggCaC-CGACCGACAGCGCc -3'
miRNA:   3'- cGGCUCaaga---G-GaGCUGGCUGUCGCG- -5'
19229 3' -55.7 NC_004684.1 + 11976 0.72 0.448127
Target:  5'- cGCUGGGUggUCUCC---ACCGcCAGCGCa -3'
miRNA:   3'- -CGGCUCA--AGAGGagcUGGCuGUCGCG- -5'
19229 3' -55.7 NC_004684.1 + 46219 0.71 0.467406
Target:  5'- gGCCGAGUcC-CCUCG-UgGACAGCuGCg -3'
miRNA:   3'- -CGGCUCAaGaGGAGCuGgCUGUCG-CG- -5'
19229 3' -55.7 NC_004684.1 + 53851 0.71 0.467406
Target:  5'- gGCCGccAGgcgcagCUCCUCGAacUCGuCGGCGCa -3'
miRNA:   3'- -CGGC--UCaa----GAGGAGCU--GGCuGUCGCG- -5'
19229 3' -55.7 NC_004684.1 + 19604 0.71 0.481153
Target:  5'- cGCCGAGaacaUCCU-GGCCGACugacgcacuaccgggGGCGCg -3'
miRNA:   3'- -CGGCUCaag-AGGAgCUGGCUG---------------UCGCG- -5'
19229 3' -55.7 NC_004684.1 + 9284 0.71 0.4971
Target:  5'- uGUCGAGUUC-CCgacGCCGACgguGGCGCu -3'
miRNA:   3'- -CGGCUCAAGaGGagcUGGCUG---UCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.