miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19229 3' -55.7 NC_004684.1 + 39274 0.67 0.707382
Target:  5'- cGCCG-GUUCagcgCCUCuAUCGACucGGUGCa -3'
miRNA:   3'- -CGGCuCAAGa---GGAGcUGGCUG--UCGCG- -5'
19229 3' -55.7 NC_004684.1 + 58082 0.69 0.611772
Target:  5'- aCCGug--CagCUCGACCGGgAGCGCg -3'
miRNA:   3'- cGGCucaaGagGAGCUGGCUgUCGCG- -5'
19229 3' -55.7 NC_004684.1 + 23446 0.69 0.611772
Target:  5'- gGCCGAucugcuGgcCUCCaUGcCCGACAGCGUg -3'
miRNA:   3'- -CGGCU------CaaGAGGaGCuGGCUGUCGCG- -5'
19229 3' -55.7 NC_004684.1 + 51610 0.69 0.62245
Target:  5'- uCCaGGUgUUCCUUGGCCGcgcuCGGCGCa -3'
miRNA:   3'- cGGcUCAaGAGGAGCUGGCu---GUCGCG- -5'
19229 3' -55.7 NC_004684.1 + 6407 0.68 0.64382
Target:  5'- gGCCGAGguguaCagCUCGG-CGGCGGCGUg -3'
miRNA:   3'- -CGGCUCaa---GagGAGCUgGCUGUCGCG- -5'
19229 3' -55.7 NC_004684.1 + 32222 0.68 0.654495
Target:  5'- aGCCG-GUUCgguaUCGACa-GCGGCGCg -3'
miRNA:   3'- -CGGCuCAAGagg-AGCUGgcUGUCGCG- -5'
19229 3' -55.7 NC_004684.1 + 57143 0.68 0.675777
Target:  5'- gGCUG-GUUCgCCUCcauggcggcgguGGCCGAC-GCGCa -3'
miRNA:   3'- -CGGCuCAAGaGGAG------------CUGGCUGuCGCG- -5'
19229 3' -55.7 NC_004684.1 + 55323 0.68 0.675777
Target:  5'- aUCGAGUUCgCCgaCGGCUGGCaggugagccuGGCGCg -3'
miRNA:   3'- cGGCUCAAGaGGa-GCUGGCUG----------UCGCG- -5'
19229 3' -55.7 NC_004684.1 + 5981 0.67 0.707382
Target:  5'- gGCCGAGcaagUCC-CGGCCuGGCucaGGCGCa -3'
miRNA:   3'- -CGGCUCaag-AGGaGCUGG-CUG---UCGCG- -5'
19229 3' -55.7 NC_004684.1 + 1348 0.69 0.605373
Target:  5'- cGCCGAcgcgcucaagcucccGUUCUUCUCGGUgGACAGCu- -3'
miRNA:   3'- -CGGCU---------------CAAGAGGAGCUGgCUGUCGcg -5'
19229 3' -55.7 NC_004684.1 + 41672 0.69 0.58729
Target:  5'- gGCCGGGccgaCCUCGGCaacacccagcgcggCGACGGCGUg -3'
miRNA:   3'- -CGGCUCaagaGGAGCUG--------------GCUGUCGCG- -5'
19229 3' -55.7 NC_004684.1 + 51156 0.69 0.579872
Target:  5'- cGCCGA---CUCCUCGgugugGCCGAU-GCGCc -3'
miRNA:   3'- -CGGCUcaaGAGGAGC-----UGGCUGuCGCG- -5'
19229 3' -55.7 NC_004684.1 + 20606 0.74 0.334668
Target:  5'- cGCCGAGcgUCUaCCUgGgcACCGGCgAGCGCc -3'
miRNA:   3'- -CGGCUCa-AGA-GGAgC--UGGCUG-UCGCG- -5'
19229 3' -55.7 NC_004684.1 + 60447 0.74 0.334668
Target:  5'- cGCCGGGUUCgaCCUCGGCCaGCAugccGgGCa -3'
miRNA:   3'- -CGGCUCAAGa-GGAGCUGGcUGU----CgCG- -5'
19229 3' -55.7 NC_004684.1 + 18333 0.72 0.420057
Target:  5'- cGCCG-GUgccgCccCCggagcCGACCGGCGGCGCg -3'
miRNA:   3'- -CGGCuCAa---Ga-GGa----GCUGGCUGUCGCG- -5'
19229 3' -55.7 NC_004684.1 + 9284 0.71 0.4971
Target:  5'- uGUCGAGUUC-CCgacGCCGACgguGGCGCu -3'
miRNA:   3'- -CGGCUCAAGaGGagcUGGCUG---UCGCG- -5'
19229 3' -55.7 NC_004684.1 + 63334 0.7 0.527613
Target:  5'- aCCGGGagguggUCUCCccggUGACCGccCAGCGCa -3'
miRNA:   3'- cGGCUCa-----AGAGGa---GCUGGCu-GUCGCG- -5'
19229 3' -55.7 NC_004684.1 + 52796 0.7 0.531735
Target:  5'- cGCUGgcGGUUCUCCUCGcgcuccuccucggugGCCc-CGGCGCa -3'
miRNA:   3'- -CGGC--UCAAGAGGAGC---------------UGGcuGUCGCG- -5'
19229 3' -55.7 NC_004684.1 + 35645 0.7 0.569309
Target:  5'- gGCCGAGUcgUUCCuggagUCGACaaagGACGGCGa -3'
miRNA:   3'- -CGGCUCAa-GAGG-----AGCUGg---CUGUCGCg -5'
19229 3' -55.7 NC_004684.1 + 12944 0.7 0.569309
Target:  5'- cGCCGucggcacccccGGUgCUCCcgcCGACCGGCGGCagGCa -3'
miRNA:   3'- -CGGC-----------UCAaGAGGa--GCUGGCUGUCG--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.