miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19229 3' -55.7 NC_004684.1 + 314 0.67 0.707382
Target:  5'- cGCCGAGgccaacgCC-CGcACCGgguACGGCGCg -3'
miRNA:   3'- -CGGCUCaaga---GGaGC-UGGC---UGUCGCG- -5'
19229 3' -55.7 NC_004684.1 + 1348 0.69 0.605373
Target:  5'- cGCCGAcgcgcucaagcucccGUUCUUCUCGGUgGACAGCu- -3'
miRNA:   3'- -CGGCU---------------CAAGAGGAGCUGgCUGUCGcg -5'
19229 3' -55.7 NC_004684.1 + 3285 0.68 0.654495
Target:  5'- aCCGAGUUCgaggCCaUGGC--ACAGCGCg -3'
miRNA:   3'- cGGCUCAAGa---GGaGCUGgcUGUCGCG- -5'
19229 3' -55.7 NC_004684.1 + 5751 0.66 0.767447
Target:  5'- cGCCGAcacCUCCgggggguUCGACUGGCccaAGUGCg -3'
miRNA:   3'- -CGGCUcaaGAGG-------AGCUGGCUG---UCGCG- -5'
19229 3' -55.7 NC_004684.1 + 5981 0.67 0.707382
Target:  5'- gGCCGAGcaagUCC-CGGCCuGGCucaGGCGCa -3'
miRNA:   3'- -CGGCUCaag-AGGaGCUGG-CUG---UCGCG- -5'
19229 3' -55.7 NC_004684.1 + 6073 0.68 0.64382
Target:  5'- cGCCGAGggCggcggCC-CGG-CGGCGGUGCu -3'
miRNA:   3'- -CGGCUCaaGa----GGaGCUgGCUGUCGCG- -5'
19229 3' -55.7 NC_004684.1 + 6407 0.68 0.64382
Target:  5'- gGCCGAGguguaCagCUCGG-CGGCGGCGUg -3'
miRNA:   3'- -CGGCUCaa---GagGAGCUgGCUGUCGCG- -5'
19229 3' -55.7 NC_004684.1 + 6515 0.74 0.348252
Target:  5'- gGCCGAGgaggugcgcaucgcgCUCC-CGGCCGACAuCGCc -3'
miRNA:   3'- -CGGCUCaa-------------GAGGaGCUGGCUGUcGCG- -5'
19229 3' -55.7 NC_004684.1 + 6788 0.68 0.66515
Target:  5'- cGCCGGGUgaccggCCUgCGcACCGugcGCGGCGUg -3'
miRNA:   3'- -CGGCUCAaga---GGA-GC-UGGC---UGUCGCG- -5'
19229 3' -55.7 NC_004684.1 + 6838 0.66 0.758526
Target:  5'- gGUCGAGUUCgagggUgUCGACgGcACcgGGCGCg -3'
miRNA:   3'- -CGGCUCAAGa----GgAGCUGgC-UG--UCGCG- -5'
19229 3' -55.7 NC_004684.1 + 9128 0.69 0.62245
Target:  5'- aCCGGuaccGUUCgaccgCCUCGGCgCGGCAGgUGCg -3'
miRNA:   3'- cGGCU----CAAGa----GGAGCUG-GCUGUC-GCG- -5'
19229 3' -55.7 NC_004684.1 + 9284 0.71 0.4971
Target:  5'- uGUCGAGUUC-CCgacGCCGACgguGGCGCu -3'
miRNA:   3'- -CGGCUCAAGaGGagcUGGCUG---UCGCG- -5'
19229 3' -55.7 NC_004684.1 + 9409 0.67 0.717791
Target:  5'- aCCuuGGUcaUgUCCUCGGCCaGCAGCGUg -3'
miRNA:   3'- cGGc-UCA--AgAGGAGCUGGcUGUCGCG- -5'
19229 3' -55.7 NC_004684.1 + 10013 0.66 0.778205
Target:  5'- uGCCG-GacCUgCCgcgcgcCGACCGGgAGCGCa -3'
miRNA:   3'- -CGGCuCaaGA-GGa-----GCUGGCUgUCGCG- -5'
19229 3' -55.7 NC_004684.1 + 10090 0.66 0.758526
Target:  5'- cGCCGGGUgCUCagccacACCGGCgacaAGCGCg -3'
miRNA:   3'- -CGGCUCAaGAGgagc--UGGCUG----UCGCG- -5'
19229 3' -55.7 NC_004684.1 + 10128 0.7 0.569309
Target:  5'- gGCCGAGcUgUgCg-GGCCGACGGUGCc -3'
miRNA:   3'- -CGGCUCaAgAgGagCUGGCUGUCGCG- -5'
19229 3' -55.7 NC_004684.1 + 10178 0.66 0.778205
Target:  5'- cGCuCGAGgagUUCCa-GACCGccCAGCGCc -3'
miRNA:   3'- -CG-GCUCaa-GAGGagCUGGCu-GUCGCG- -5'
19229 3' -55.7 NC_004684.1 + 10355 0.68 0.675777
Target:  5'- uGCCGuGgcccaCCgUGACCGAcCAGCGCa -3'
miRNA:   3'- -CGGCuCaaga-GGaGCUGGCU-GUCGCG- -5'
19229 3' -55.7 NC_004684.1 + 10386 0.66 0.748499
Target:  5'- cGCCGGGUa--CCa-GGCCGcCAGCGUg -3'
miRNA:   3'- -CGGCUCAagaGGagCUGGCuGUCGCG- -5'
19229 3' -55.7 NC_004684.1 + 11976 0.72 0.448127
Target:  5'- cGCUGGGUggUCUCC---ACCGcCAGCGCa -3'
miRNA:   3'- -CGGCUCA--AGAGGagcUGGCuGUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.