Results 1 - 20 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19233 | 3' | -54.7 | NC_004684.1 | + | 36910 | 0.66 | 0.76099 |
Target: 5'- cUGGCCgGugGCAucGcCCGGUCGAgGCc -3' miRNA: 3'- cACCGG-CugUGUcuU-GGUCAGCUgUG- -5' |
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19233 | 3' | -54.7 | NC_004684.1 | + | 33588 | 0.66 | 0.800547 |
Target: 5'- --cGCCGACGCcGAACCGcUCGAUg- -3' miRNA: 3'- cacCGGCUGUGuCUUGGUcAGCUGug -5' |
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19233 | 3' | -54.7 | NC_004684.1 | + | 60712 | 0.66 | 0.771103 |
Target: 5'- -aGGUCGACcuguGCAG-GCCAcucccguggcauGUCGACACc -3' miRNA: 3'- caCCGGCUG----UGUCuUGGU------------CAGCUGUG- -5' |
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19233 | 3' | -54.7 | NC_004684.1 | + | 41583 | 0.66 | 0.771103 |
Target: 5'- cUGGCCGcCACccGGCCAGUUgGugACg -3' miRNA: 3'- cACCGGCuGUGucUUGGUCAG-CugUG- -5' |
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19233 | 3' | -54.7 | NC_004684.1 | + | 31259 | 0.66 | 0.800547 |
Target: 5'- -cGGCCuccggGACACcuGGAACCGcaucGUCGGCGg -3' miRNA: 3'- caCCGG-----CUGUG--UCUUGGU----CAGCUGUg -5' |
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19233 | 3' | -54.7 | NC_004684.1 | + | 7644 | 0.66 | 0.771103 |
Target: 5'- cGUGGCgGGCGUGGuGACCGgGUCGGCGg -3' miRNA: 3'- -CACCGgCUGUGUC-UUGGU-CAGCUGUg -5' |
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19233 | 3' | -54.7 | NC_004684.1 | + | 8883 | 0.66 | 0.771103 |
Target: 5'- -cGGC--ACGCuGGACCgcAGUCGGCGCg -3' miRNA: 3'- caCCGgcUGUGuCUUGG--UCAGCUGUG- -5' |
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19233 | 3' | -54.7 | NC_004684.1 | + | 53702 | 0.66 | 0.759972 |
Target: 5'- uUGGCCGACcgguagggGCGGAuguccggcaugguGCCGGguUCGACGg -3' miRNA: 3'- cACCGGCUG--------UGUCU-------------UGGUC--AGCUGUg -5' |
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19233 | 3' | -54.7 | NC_004684.1 | + | 49221 | 0.66 | 0.76099 |
Target: 5'- -cGGUCGGUGCcGGGCCGggcGUCGGCACg -3' miRNA: 3'- caCCGGCUGUGuCUUGGU---CAGCUGUG- -5' |
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19233 | 3' | -54.7 | NC_004684.1 | + | 1380 | 0.66 | 0.768084 |
Target: 5'- cUGGCCGACGCcaAGGccgccguugcacugGCCAG-CGACc- -3' miRNA: 3'- cACCGGCUGUG--UCU--------------UGGUCaGCUGug -5' |
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19233 | 3' | -54.7 | NC_004684.1 | + | 43459 | 0.66 | 0.800547 |
Target: 5'- -gGGCgCGGCAgCAGGugCGG-CGGCAg -3' miRNA: 3'- caCCG-GCUGU-GUCUugGUCaGCUGUg -5' |
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19233 | 3' | -54.7 | NC_004684.1 | + | 13005 | 0.66 | 0.775109 |
Target: 5'- gGUGGauuaugucccCCGACGCGcccgguuacgucgccGGGCCGGUCGGCu- -3' miRNA: 3'- -CACC----------GGCUGUGU---------------CUUGGUCAGCUGug -5' |
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19233 | 3' | -54.7 | NC_004684.1 | + | 59134 | 0.66 | 0.771103 |
Target: 5'- -cGGCgcaCGugGCGGGACUgcauguuGUCGGCGCu -3' miRNA: 3'- caCCG---GCugUGUCUUGGu------CAGCUGUG- -5' |
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19233 | 3' | -54.7 | NC_004684.1 | + | 32631 | 0.66 | 0.771103 |
Target: 5'- aGUGGgaCGACACcgccgAGAucguGCCGGUUGGCAa -3' miRNA: 3'- -CACCg-GCUGUG-----UCU----UGGUCAGCUGUg -5' |
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19233 | 3' | -54.7 | NC_004684.1 | + | 43253 | 0.66 | 0.790892 |
Target: 5'- -gGGCCGGagaGCAcGGCCAuGUCGcCGCg -3' miRNA: 3'- caCCGGCUg--UGUcUUGGU-CAGCuGUG- -5' |
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19233 | 3' | -54.7 | NC_004684.1 | + | 52755 | 0.66 | 0.800547 |
Target: 5'- cGUGGCCGcugGCGCAGuc---GUUGACGCc -3' miRNA: 3'- -CACCGGC---UGUGUCuugguCAGCUGUG- -5' |
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19233 | 3' | -54.7 | NC_004684.1 | + | 20261 | 0.66 | 0.781074 |
Target: 5'- -cGGcCCGGCGCGuucccGGCCccuguGGUCGACACc -3' miRNA: 3'- caCC-GGCUGUGUc----UUGG-----UCAGCUGUG- -5' |
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19233 | 3' | -54.7 | NC_004684.1 | + | 21865 | 0.66 | 0.800547 |
Target: 5'- -aGGCCG-CACAGGaaACCAG-CGAa-- -3' miRNA: 3'- caCCGGCuGUGUCU--UGGUCaGCUgug -5' |
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19233 | 3' | -54.7 | NC_004684.1 | + | 41775 | 0.66 | 0.800547 |
Target: 5'- aGUGGgCG-UACGGAcgcgGCCAGgugcCGACGCc -3' miRNA: 3'- -CACCgGCuGUGUCU----UGGUCa---GCUGUG- -5' |
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19233 | 3' | -54.7 | NC_004684.1 | + | 6450 | 0.66 | 0.800547 |
Target: 5'- uUGGCCGagGCGCAGGggaugaugACCAGcugggCGGCGg -3' miRNA: 3'- cACCGGC--UGUGUCU--------UGGUCa----GCUGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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