miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19233 3' -54.7 NC_004684.1 + 462 0.69 0.599848
Target:  5'- cGUGGCCGugGaCAaccGGGCCagcgaGGUCGGCAg -3'
miRNA:   3'- -CACCGGCugU-GU---CUUGG-----UCAGCUGUg -5'
19233 3' -54.7 NC_004684.1 + 775 0.67 0.719345
Target:  5'- -aGGCCGcagGCACcaagcuggccaAGAACCAgGUCGuGCGCg -3'
miRNA:   3'- caCCGGC---UGUG-----------UCUUGGU-CAGC-UGUG- -5'
19233 3' -54.7 NC_004684.1 + 1380 0.66 0.768084
Target:  5'- cUGGCCGACGCcaAGGccgccguugcacugGCCAG-CGACc- -3'
miRNA:   3'- cACCGGCUGUG--UCU--------------UGGUCaGCUGug -5'
19233 3' -54.7 NC_004684.1 + 2440 0.69 0.63265
Target:  5'- -aGGCCGACAUcgcccgccuGGGcgGCCAGcUCGGCGu -3'
miRNA:   3'- caCCGGCUGUG---------UCU--UGGUC-AGCUGUg -5'
19233 3' -54.7 NC_004684.1 + 3429 0.68 0.654532
Target:  5'- cUGGCCGcCACAG--UCAG-CGGCACc -3'
miRNA:   3'- cACCGGCuGUGUCuuGGUCaGCUGUG- -5'
19233 3' -54.7 NC_004684.1 + 3628 0.78 0.191919
Target:  5'- aGUGGCCGAagcgcgccacCugGGucauGCCGGUCGGCACc -3'
miRNA:   3'- -CACCGGCU----------GugUCu---UGGUCAGCUGUG- -5'
19233 3' -54.7 NC_004684.1 + 3983 0.74 0.328395
Target:  5'- cUGGCCgGugGCAGcuCCAGUCGAUguGCg -3'
miRNA:   3'- cACCGG-CugUGUCuuGGUCAGCUG--UG- -5'
19233 3' -54.7 NC_004684.1 + 4187 0.67 0.750747
Target:  5'- gGUGGCCGAgAagauGGGGCCGuUCGGcCGCg -3'
miRNA:   3'- -CACCGGCUgUg---UCUUGGUcAGCU-GUG- -5'
19233 3' -54.7 NC_004684.1 + 6450 0.66 0.800547
Target:  5'- uUGGCCGagGCGCAGGggaugaugACCAGcugggCGGCGg -3'
miRNA:   3'- cACCGGC--UGUGUCU--------UGGUCa----GCUGUg -5'
19233 3' -54.7 NC_004684.1 + 6682 0.78 0.197103
Target:  5'- aGUGGCCuGCACAGGucgaccugGCCAccGUCGGCGCg -3'
miRNA:   3'- -CACCGGcUGUGUCU--------UGGU--CAGCUGUG- -5'
19233 3' -54.7 NC_004684.1 + 6743 0.72 0.433875
Target:  5'- cUGGCUGGCcCGGAGCC-GUCGgguGCACg -3'
miRNA:   3'- cACCGGCUGuGUCUUGGuCAGC---UGUG- -5'
19233 3' -54.7 NC_004684.1 + 7644 0.66 0.771103
Target:  5'- cGUGGCgGGCGUGGuGACCGgGUCGGCGg -3'
miRNA:   3'- -CACCGgCUGUGUC-UUGGU-CAGCUGUg -5'
19233 3' -54.7 NC_004684.1 + 8762 0.66 0.800547
Target:  5'- -aGGCCcaGCGCGGcACCAGcCGcCACg -3'
miRNA:   3'- caCCGGc-UGUGUCuUGGUCaGCuGUG- -5'
19233 3' -54.7 NC_004684.1 + 8883 0.66 0.771103
Target:  5'- -cGGC--ACGCuGGACCgcAGUCGGCGCg -3'
miRNA:   3'- caCCGgcUGUGuCUUGG--UCAGCUGUG- -5'
19233 3' -54.7 NC_004684.1 + 8957 0.71 0.514158
Target:  5'- -gGGuCCGGCACGGGGCCGGa-GGCAa -3'
miRNA:   3'- caCC-GGCUGUGUCUUGGUCagCUGUg -5'
19233 3' -54.7 NC_004684.1 + 10498 0.71 0.473161
Target:  5'- -cGGCCGACGCAcuGGGCCgccgacGGUCaGCGCg -3'
miRNA:   3'- caCCGGCUGUGU--CUUGG------UCAGcUGUG- -5'
19233 3' -54.7 NC_004684.1 + 11834 0.66 0.800547
Target:  5'- -cGGCCaccgGGcCACGGcGGCCAG-CGGCGCg -3'
miRNA:   3'- caCCGG----CU-GUGUC-UUGGUCaGCUGUG- -5'
19233 3' -54.7 NC_004684.1 + 11950 0.66 0.790892
Target:  5'- uUGG-CGACAUAGAccACCGG-CGcACGCg -3'
miRNA:   3'- cACCgGCUGUGUCU--UGGUCaGC-UGUG- -5'
19233 3' -54.7 NC_004684.1 + 12730 0.7 0.578101
Target:  5'- -aGGCCGugGacCAG-GCCgaGGUCGACGCc -3'
miRNA:   3'- caCCGGCugU--GUCuUGG--UCAGCUGUG- -5'
19233 3' -54.7 NC_004684.1 + 13005 0.66 0.775109
Target:  5'- gGUGGauuaugucccCCGACGCGcccgguuacgucgccGGGCCGGUCGGCu- -3'
miRNA:   3'- -CACC----------GGCUGUGU---------------CUUGGUCAGCUGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.