Results 1 - 20 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19233 | 3' | -54.7 | NC_004684.1 | + | 50626 | 1.09 | 0.001435 |
Target: 5'- cGUGGCCGACACAGAACCAGUCGACACc -3' miRNA: 3'- -CACCGGCUGUGUCUUGGUCAGCUGUG- -5' |
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19233 | 3' | -54.7 | NC_004684.1 | + | 3628 | 0.78 | 0.191919 |
Target: 5'- aGUGGCCGAagcgcgccacCugGGucauGCCGGUCGGCACc -3' miRNA: 3'- -CACCGGCU----------GugUCu---UGGUCAGCUGUG- -5' |
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19233 | 3' | -54.7 | NC_004684.1 | + | 61469 | 0.78 | 0.191919 |
Target: 5'- gGUGGCCaGCGCGGccAGCCGGUCGuGCGCg -3' miRNA: 3'- -CACCGGcUGUGUC--UUGGUCAGC-UGUG- -5' |
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19233 | 3' | -54.7 | NC_004684.1 | + | 6682 | 0.78 | 0.197103 |
Target: 5'- aGUGGCCuGCACAGGucgaccugGCCAccGUCGGCGCg -3' miRNA: 3'- -CACCGGcUGUGUCU--------UGGU--CAGCUGUG- -5' |
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19233 | 3' | -54.7 | NC_004684.1 | + | 35647 | 0.77 | 0.230831 |
Target: 5'- -aGGCCGACguACAGGGCC-GUCGGCGg -3' miRNA: 3'- caCCGGCUG--UGUCUUGGuCAGCUGUg -5' |
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19233 | 3' | -54.7 | NC_004684.1 | + | 24404 | 0.76 | 0.27619 |
Target: 5'- -aGGCCGACACcaAGAagGCCcaggccgaAGUCGACGCc -3' miRNA: 3'- caCCGGCUGUG--UCU--UGG--------UCAGCUGUG- -5' |
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19233 | 3' | -54.7 | NC_004684.1 | + | 19317 | 0.75 | 0.305168 |
Target: 5'- -cGGCCGACGcCGGAACCgguGGUCGAaacCGCc -3' miRNA: 3'- caCCGGCUGU-GUCUUGG---UCAGCU---GUG- -5' |
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19233 | 3' | -54.7 | NC_004684.1 | + | 3983 | 0.74 | 0.328395 |
Target: 5'- cUGGCCgGugGCAGcuCCAGUCGAUguGCg -3' miRNA: 3'- cACCGG-CugUGUCuuGGUCAGCUG--UG- -5' |
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19233 | 3' | -54.7 | NC_004684.1 | + | 42213 | 0.74 | 0.344592 |
Target: 5'- gGUGGCCGACGUGGccGCCGguGUCGGCACc -3' miRNA: 3'- -CACCGGCUGUGUCu-UGGU--CAGCUGUG- -5' |
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19233 | 3' | -54.7 | NC_004684.1 | + | 33822 | 0.74 | 0.352903 |
Target: 5'- cGUGGUCGAcCACGGGAU--GUCGACGCc -3' miRNA: 3'- -CACCGGCU-GUGUCUUGguCAGCUGUG- -5' |
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19233 | 3' | -54.7 | NC_004684.1 | + | 50981 | 0.73 | 0.378678 |
Target: 5'- -aGGCCGACcccugGCAGAugUAGUUGAC-Cg -3' miRNA: 3'- caCCGGCUG-----UGUCUugGUCAGCUGuG- -5' |
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19233 | 3' | -54.7 | NC_004684.1 | + | 42055 | 0.73 | 0.387546 |
Target: 5'- aUGGCCGACggGCAGAaagACCAGUC-ACGg -3' miRNA: 3'- cACCGGCUG--UGUCU---UGGUCAGcUGUg -5' |
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19233 | 3' | -54.7 | NC_004684.1 | + | 29353 | 0.72 | 0.421519 |
Target: 5'- gGUGGUCGGCGCguacagggcguccaGGAACUGGUCG-CGCu -3' miRNA: 3'- -CACCGGCUGUG--------------UCUUGGUCAGCuGUG- -5' |
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19233 | 3' | -54.7 | NC_004684.1 | + | 6743 | 0.72 | 0.433875 |
Target: 5'- cUGGCUGGCcCGGAGCC-GUCGgguGCACg -3' miRNA: 3'- cACCGGCUGuGUCUUGGuCAGC---UGUG- -5' |
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19233 | 3' | -54.7 | NC_004684.1 | + | 38952 | 0.72 | 0.463168 |
Target: 5'- -gGGCUGGCGCAcaaugucauGCCAGUCGAcCACc -3' miRNA: 3'- caCCGGCUGUGUcu-------UGGUCAGCU-GUG- -5' |
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19233 | 3' | -54.7 | NC_004684.1 | + | 66343 | 0.72 | 0.463168 |
Target: 5'- gGUGacGCCGGgGCGGGcgGCCAGggCGACGCg -3' miRNA: 3'- -CAC--CGGCUgUGUCU--UGGUCa-GCUGUG- -5' |
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19233 | 3' | -54.7 | NC_004684.1 | + | 19338 | 0.72 | 0.463168 |
Target: 5'- cGUGGCCGagcgggagGCGCuGAuCCAG-CGGCGCa -3' miRNA: 3'- -CACCGGC--------UGUGuCUuGGUCaGCUGUG- -5' |
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19233 | 3' | -54.7 | NC_004684.1 | + | 10498 | 0.71 | 0.473161 |
Target: 5'- -cGGCCGACGCAcuGGGCCgccgacGGUCaGCGCg -3' miRNA: 3'- caCCGGCUGUGU--CUUGG------UCAGcUGUG- -5' |
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19233 | 3' | -54.7 | NC_004684.1 | + | 53494 | 0.71 | 0.483261 |
Target: 5'- cUGGCCGuCGguGAucGCCuugguGUCGACACc -3' miRNA: 3'- cACCGGCuGUguCU--UGGu----CAGCUGUG- -5' |
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19233 | 3' | -54.7 | NC_004684.1 | + | 66228 | 0.71 | 0.483261 |
Target: 5'- -cGGCuCGGCACcaaAGuGCaCGGUCGGCACg -3' miRNA: 3'- caCCG-GCUGUG---UCuUG-GUCAGCUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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