miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19233 5' -64.2 NC_004684.1 + 50661 1.08 0.000226
Target:  5'- gGGGUGCGGACCAGGCGUGCGCCCGGUg -3'
miRNA:   3'- -CCCACGCCUGGUCCGCACGCGGGCCA- -5'
19233 5' -64.2 NC_004684.1 + 5843 0.77 0.054665
Target:  5'- cGGUGUucgaGGACCAGGCGUGCGaCUGGc -3'
miRNA:   3'- cCCACG----CCUGGUCCGCACGCgGGCCa -5'
19233 5' -64.2 NC_004684.1 + 24512 0.76 0.067772
Target:  5'- cGGUGCcagaGGCCGGGCGUGCggcgGCCUGGUu -3'
miRNA:   3'- cCCACGc---CUGGUCCGCACG----CGGGCCA- -5'
19233 5' -64.2 NC_004684.1 + 61925 0.76 0.071495
Target:  5'- gGGGUGCGGGCCAcGGCacccgccGgGCCUGGUg -3'
miRNA:   3'- -CCCACGCCUGGU-CCGca-----CgCGGGCCA- -5'
19233 5' -64.2 NC_004684.1 + 7864 0.72 0.134036
Target:  5'- cGGUGCaGGACCugugcgcAGGCcuacgacGCGCCCGGUg -3'
miRNA:   3'- cCCACG-CCUGG-------UCCGca-----CGCGGGCCA- -5'
19233 5' -64.2 NC_004684.1 + 47100 0.72 0.137887
Target:  5'- cGGUGCcgGGACgcggggguccggCAGaGCGUGCGCCuCGGUg -3'
miRNA:   3'- cCCACG--CCUG------------GUC-CGCACGCGG-GCCA- -5'
19233 5' -64.2 NC_004684.1 + 10519 0.72 0.144779
Target:  5'- aGGUGCGGguGCCAGG-GUGCGCUgaccucgUGGUg -3'
miRNA:   3'- cCCACGCC--UGGUCCgCACGCGG-------GCCA- -5'
19233 5' -64.2 NC_004684.1 + 52261 0.71 0.173392
Target:  5'- uGGcGUGGAUCAGGCccaGCGuCCCGGUg -3'
miRNA:   3'- cCCaCGCCUGGUCCGca-CGC-GGGCCA- -5'
19233 5' -64.2 NC_004684.1 + 19545 0.7 0.177806
Target:  5'- cGGGUGC--GCCGGGCG-GUGCCaGGUc -3'
miRNA:   3'- -CCCACGccUGGUCCGCaCGCGGgCCA- -5'
19233 5' -64.2 NC_004684.1 + 52531 0.7 0.182319
Target:  5'- cGGUGUGGAgCCAGGag-GUGUCCGGc -3'
miRNA:   3'- cCCACGCCU-GGUCCgcaCGCGGGCCa -5'
19233 5' -64.2 NC_004684.1 + 63059 0.7 0.186934
Target:  5'- cGGUG-GGugUcauAGGCacuccaGUGCGCCCGGUg -3'
miRNA:   3'- cCCACgCCugG---UCCG------CACGCGGGCCA- -5'
19233 5' -64.2 NC_004684.1 + 46761 0.7 0.196472
Target:  5'- -cGUGCGGACgCAGGCG-GCGCa-GGa -3'
miRNA:   3'- ccCACGCCUG-GUCCGCaCGCGggCCa -5'
19233 5' -64.2 NC_004684.1 + 49225 0.69 0.211575
Target:  5'- cGGUGcCGGGCCGGGCGUcggcacGuCGCCCc-- -3'
miRNA:   3'- cCCAC-GCCUGGUCCGCA------C-GCGGGcca -5'
19233 5' -64.2 NC_004684.1 + 30635 0.69 0.211575
Target:  5'- cGGGcGCGGcCCuGGCGgcgucaGCGCCgGGa -3'
miRNA:   3'- -CCCaCGCCuGGuCCGCa-----CGCGGgCCa -5'
19233 5' -64.2 NC_004684.1 + 1462 0.69 0.211575
Target:  5'- uGGU-CGaGACCGGGcCGgacGUGCCCGGUg -3'
miRNA:   3'- cCCAcGC-CUGGUCC-GCa--CGCGGGCCA- -5'
19233 5' -64.2 NC_004684.1 + 63454 0.69 0.216297
Target:  5'- cGGUGCGGAgaacgucaccuCCAGGUGgucaGCGgggucuuCCCGGUa -3'
miRNA:   3'- cCCACGCCU-----------GGUCCGCa---CGC-------GGGCCA- -5'
19233 5' -64.2 NC_004684.1 + 49514 0.69 0.216827
Target:  5'- gGGGUguaGCGGcCCA-GCGUGCaCCCGGc -3'
miRNA:   3'- -CCCA---CGCCuGGUcCGCACGcGGGCCa -5'
19233 5' -64.2 NC_004684.1 + 8672 0.69 0.227666
Target:  5'- cGGUGCGG-CCAGGUgccuguggccGUGCGUgaGGUc -3'
miRNA:   3'- cCCACGCCuGGUCCG----------CACGCGggCCA- -5'
19233 5' -64.2 NC_004684.1 + 51002 0.69 0.227666
Target:  5'- uGGGUGCGGAUgUAGuCGaUGUGCCgGGUg -3'
miRNA:   3'- -CCCACGCCUG-GUCcGC-ACGCGGgCCA- -5'
19233 5' -64.2 NC_004684.1 + 32923 0.68 0.24537
Target:  5'- cGGUGcCGGACCGGGUGccucgggcaggauggGcCGCUCGGg -3'
miRNA:   3'- cCCAC-GCCUGGUCCGCa--------------C-GCGGGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.