miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19233 5' -64.2 NC_004684.1 + 61654 0.66 0.331416
Target:  5'- aGGUGuCGGcgaaguAgCAGGUGUGCGCCUGc- -3'
miRNA:   3'- cCCAC-GCC------UgGUCCGCACGCGGGCca -5'
19233 5' -64.2 NC_004684.1 + 50324 0.68 0.269247
Target:  5'- cGGUGCGcccGGCCAGGCGgGCGgCCu-- -3'
miRNA:   3'- cCCACGC---CUGGUCCGCaCGCgGGcca -5'
19233 5' -64.2 NC_004684.1 + 35231 0.67 0.282202
Target:  5'- uGGGUGCcGuACCuGGUGc-CGCCCGGUu -3'
miRNA:   3'- -CCCACGcC-UGGuCCGCacGCGGGCCA- -5'
19233 5' -64.2 NC_004684.1 + 60735 0.67 0.288862
Target:  5'- aGGUGCccggcGACCGGGUG-GcCGCCgGGUg -3'
miRNA:   3'- cCCACGc----CUGGUCCGCaC-GCGGgCCA- -5'
19233 5' -64.2 NC_004684.1 + 7552 0.67 0.293598
Target:  5'- cGGUGCuGGACC-GGCcccggguggcgcugGUGCGgCUGGUg -3'
miRNA:   3'- cCCACG-CCUGGuCCG--------------CACGCgGGCCA- -5'
19233 5' -64.2 NC_004684.1 + 37637 0.67 0.302552
Target:  5'- cGGUGCGcuGGCCAuGGC---CGCCCGGUc -3'
miRNA:   3'- cCCACGC--CUGGU-CCGcacGCGGGCCA- -5'
19233 5' -64.2 NC_004684.1 + 48029 0.67 0.302552
Target:  5'- cGGGaaccgcUGCGcGAUCAGGCG-GCGCaugCGGa -3'
miRNA:   3'- -CCC------ACGC-CUGGUCCGCaCGCGg--GCCa -5'
19233 5' -64.2 NC_004684.1 + 48967 0.66 0.324015
Target:  5'- cGGG-GUGGcCgGGGCGgGCGCgUCGGUg -3'
miRNA:   3'- -CCCaCGCCuGgUCCGCaCGCG-GGCCA- -5'
19233 5' -64.2 NC_004684.1 + 62391 0.66 0.326961
Target:  5'- aGGaGCGGcACCGGGCccuugcccucgcgcUGCGCCCaGGUg -3'
miRNA:   3'- cCCaCGCC-UGGUCCGc-------------ACGCGGG-CCA- -5'
19233 5' -64.2 NC_004684.1 + 57185 0.68 0.262951
Target:  5'- cGGGcgcagGCGGGCCuggaAGGCGgcgGCGCgaUGGUg -3'
miRNA:   3'- -CCCa----CGCCUGG----UCCGCa--CGCGg-GCCA- -5'
19233 5' -64.2 NC_004684.1 + 45779 0.68 0.256775
Target:  5'- cGGUGCGGuACCGGuCGUagaccuguucGCGCUCGGc -3'
miRNA:   3'- cCCACGCC-UGGUCcGCA----------CGCGGGCCa -5'
19233 5' -64.2 NC_004684.1 + 20322 0.68 0.250719
Target:  5'- cGGcgGCGG-CCAucgagaucGGCGU-CGCCCGGUg -3'
miRNA:   3'- cCCa-CGCCuGGU--------CCGCAcGCGGGCCA- -5'
19233 5' -64.2 NC_004684.1 + 5843 0.77 0.054665
Target:  5'- cGGUGUucgaGGACCAGGCGUGCGaCUGGc -3'
miRNA:   3'- cCCACG----CCUGGUCCGCACGCgGGCCa -5'
19233 5' -64.2 NC_004684.1 + 61925 0.76 0.071495
Target:  5'- gGGGUGCGGGCCAcGGCacccgccGgGCCUGGUg -3'
miRNA:   3'- -CCCACGCCUGGU-CCGca-----CgCGGGCCA- -5'
19233 5' -64.2 NC_004684.1 + 47100 0.72 0.137887
Target:  5'- cGGUGCcgGGACgcggggguccggCAGaGCGUGCGCCuCGGUg -3'
miRNA:   3'- cCCACG--CCUG------------GUC-CGCACGCGG-GCCA- -5'
19233 5' -64.2 NC_004684.1 + 19545 0.7 0.177806
Target:  5'- cGGGUGC--GCCGGGCG-GUGCCaGGUc -3'
miRNA:   3'- -CCCACGccUGGUCCGCaCGCGGgCCA- -5'
19233 5' -64.2 NC_004684.1 + 52531 0.7 0.182319
Target:  5'- cGGUGUGGAgCCAGGag-GUGUCCGGc -3'
miRNA:   3'- cCCACGCCU-GGUCCgcaCGCGGGCCa -5'
19233 5' -64.2 NC_004684.1 + 46761 0.7 0.196472
Target:  5'- -cGUGCGGACgCAGGCG-GCGCa-GGa -3'
miRNA:   3'- ccCACGCCUG-GUCCGCaCGCGggCCa -5'
19233 5' -64.2 NC_004684.1 + 49225 0.69 0.211575
Target:  5'- cGGUGcCGGGCCGGGCGUcggcacGuCGCCCc-- -3'
miRNA:   3'- cCCAC-GCCUGGUCCGCA------C-GCGGGcca -5'
19233 5' -64.2 NC_004684.1 + 49514 0.69 0.216827
Target:  5'- gGGGUguaGCGGcCCA-GCGUGCaCCCGGc -3'
miRNA:   3'- -CCCA---CGCCuGGUcCGCACGcGGGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.