miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19233 5' -64.2 NC_004684.1 + 1462 0.69 0.211575
Target:  5'- uGGU-CGaGACCGGGcCGgacGUGCCCGGUg -3'
miRNA:   3'- cCCAcGC-CUGGUCC-GCa--CGCGGGCCA- -5'
19233 5' -64.2 NC_004684.1 + 5843 0.77 0.054665
Target:  5'- cGGUGUucgaGGACCAGGCGUGCGaCUGGc -3'
miRNA:   3'- cCCACG----CCUGGUCCGCACGCgGGCCa -5'
19233 5' -64.2 NC_004684.1 + 7249 0.66 0.370271
Target:  5'- cGGUGCaccaGGAgCaAGGUGcGCGaCCCGGUc -3'
miRNA:   3'- cCCACG----CCUgG-UCCGCaCGC-GGGCCA- -5'
19233 5' -64.2 NC_004684.1 + 7552 0.67 0.293598
Target:  5'- cGGUGCuGGACC-GGCcccggguggcgcugGUGCGgCUGGUg -3'
miRNA:   3'- cCCACG-CCUGGuCCG--------------CACGCgGGCCA- -5'
19233 5' -64.2 NC_004684.1 + 7864 0.72 0.134036
Target:  5'- cGGUGCaGGACCugugcgcAGGCcuacgacGCGCCCGGUg -3'
miRNA:   3'- cCCACG-CCUGG-------UCCGca-----CGCGGGCCA- -5'
19233 5' -64.2 NC_004684.1 + 8179 0.66 0.370271
Target:  5'- gGGGgcgcGCuGGGCCAGGCGcagcugaucaaGCGCgUGGUc -3'
miRNA:   3'- -CCCa---CG-CCUGGUCCGCa----------CGCGgGCCA- -5'
19233 5' -64.2 NC_004684.1 + 8672 0.69 0.227666
Target:  5'- cGGUGCGG-CCAGGUgccuguggccGUGCGUgaGGUc -3'
miRNA:   3'- cCCACGCCuGGUCCG----------CACGCGggCCA- -5'
19233 5' -64.2 NC_004684.1 + 10519 0.72 0.144779
Target:  5'- aGGUGCGGguGCCAGG-GUGCGCUgaccucgUGGUg -3'
miRNA:   3'- cCCACGCC--UGGUCCgCACGCGG-------GCCA- -5'
19233 5' -64.2 NC_004684.1 + 12218 0.66 0.338942
Target:  5'- cGGUGCGuucuCCGGGgGUGCuUCCGGc -3'
miRNA:   3'- cCCACGCcu--GGUCCgCACGcGGGCCa -5'
19233 5' -64.2 NC_004684.1 + 19099 0.66 0.370271
Target:  5'- uGGUGCGcgaaGGCCgguGGGaCGUGCGCauGGUg -3'
miRNA:   3'- cCCACGC----CUGG---UCC-GCACGCGggCCA- -5'
19233 5' -64.2 NC_004684.1 + 19545 0.7 0.177806
Target:  5'- cGGGUGC--GCCGGGCG-GUGCCaGGUc -3'
miRNA:   3'- -CCCACGccUGGUCCGCaCGCGGgCCA- -5'
19233 5' -64.2 NC_004684.1 + 20322 0.68 0.250719
Target:  5'- cGGcgGCGG-CCAucgagaucGGCGU-CGCCCGGUg -3'
miRNA:   3'- cCCa-CGCCuGGU--------CCGCAcGCGGGCCA- -5'
19233 5' -64.2 NC_004684.1 + 24512 0.76 0.067772
Target:  5'- cGGUGCcagaGGCCGGGCGUGCggcgGCCUGGUu -3'
miRNA:   3'- cCCACGc---CUGGUCCGCACG----CGGGCCA- -5'
19233 5' -64.2 NC_004684.1 + 30635 0.69 0.211575
Target:  5'- cGGGcGCGGcCCuGGCGgcgucaGCGCCgGGa -3'
miRNA:   3'- -CCCaCGCCuGGuCCGCa-----CGCGGgCCa -5'
19233 5' -64.2 NC_004684.1 + 30839 0.66 0.331416
Target:  5'- cGGGUa-GGugCcGGaaUGCGCCCGGUa -3'
miRNA:   3'- -CCCAcgCCugGuCCgcACGCGGGCCA- -5'
19233 5' -64.2 NC_004684.1 + 31683 0.66 0.338942
Target:  5'- cGGGUGaaacaGGACC-GGC-UGaucaacauCGCCCGGUu -3'
miRNA:   3'- -CCCACg----CCUGGuCCGcAC--------GCGGGCCA- -5'
19233 5' -64.2 NC_004684.1 + 32923 0.68 0.24537
Target:  5'- cGGUGcCGGACCGGGUGccucgggcaggauggGcCGCUCGGg -3'
miRNA:   3'- cCCAC-GCCUGGUCCGCa--------------C-GCGGGCCa -5'
19233 5' -64.2 NC_004684.1 + 33885 0.66 0.346591
Target:  5'- ---gGCGGugCGGGCG-GUG-CCGGUg -3'
miRNA:   3'- cccaCGCCugGUCCGCaCGCgGGCCA- -5'
19233 5' -64.2 NC_004684.1 + 34429 0.66 0.370271
Target:  5'- aGGcgGCGagguuGGCCAGcGCGaGCGCCUGGa -3'
miRNA:   3'- cCCa-CGC-----CUGGUC-CGCaCGCGGGCCa -5'
19233 5' -64.2 NC_004684.1 + 35231 0.67 0.282202
Target:  5'- uGGGUGCcGuACCuGGUGc-CGCCCGGUu -3'
miRNA:   3'- -CCCACGcC-UGGuCCGCacGCGGGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.