miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19234 3' -53.9 NC_004684.1 + 52287 1.11 0.001187
Target:  5'- aCCAGCUUGCUGGCACGUGCGAACACAu -3'
miRNA:   3'- -GGUCGAACGACCGUGCACGCUUGUGU- -5'
19234 3' -53.9 NC_004684.1 + 34073 0.78 0.212703
Target:  5'- aCCGGCgaccCUGGCGCG-GCGGGCGCGa -3'
miRNA:   3'- -GGUCGaac-GACCGUGCaCGCUUGUGU- -5'
19234 3' -53.9 NC_004684.1 + 58647 0.76 0.29013
Target:  5'- aUCAGCUcGCcgGGCGCGgcgGCGAACAUc -3'
miRNA:   3'- -GGUCGAaCGa-CCGUGCa--CGCUUGUGu -5'
19234 3' -53.9 NC_004684.1 + 15288 0.75 0.328391
Target:  5'- aCCAGCccgacguuugGCUGGCGCGacGCGGugGCAa -3'
miRNA:   3'- -GGUCGaa--------CGACCGUGCa-CGCUugUGU- -5'
19234 3' -53.9 NC_004684.1 + 55800 0.74 0.397069
Target:  5'- aCCGGgUgguccGgUGaGCGCGUGCGAGCACGg -3'
miRNA:   3'- -GGUCgAa----CgAC-CGUGCACGCUUGUGU- -5'
19234 3' -53.9 NC_004684.1 + 41260 0.73 0.425099
Target:  5'- gCCAGCgaggUGCUGGUGCG-GuCGGACAg- -3'
miRNA:   3'- -GGUCGa---ACGACCGUGCaC-GCUUGUgu -5'
19234 3' -53.9 NC_004684.1 + 54492 0.73 0.444428
Target:  5'- aCCGGCaccGCUGGCg---GCGAGCGCAg -3'
miRNA:   3'- -GGUCGaa-CGACCGugcaCGCUUGUGU- -5'
19234 3' -53.9 NC_004684.1 + 57880 0.72 0.464241
Target:  5'- gCCAGaccggUGCUGGCugGUGgcCGGGCugAa -3'
miRNA:   3'- -GGUCga---ACGACCGugCAC--GCUUGugU- -5'
19234 3' -53.9 NC_004684.1 + 60680 0.72 0.474318
Target:  5'- uCCAGCUUGgaGGCGuCG-GUGAuCACGg -3'
miRNA:   3'- -GGUCGAACgaCCGU-GCaCGCUuGUGU- -5'
19234 3' -53.9 NC_004684.1 + 44454 0.72 0.494794
Target:  5'- aCCAGCUUgagcacGCUGGcCACcUGCGuGCGCGu -3'
miRNA:   3'- -GGUCGAA------CGACC-GUGcACGCuUGUGU- -5'
19234 3' -53.9 NC_004684.1 + 5869 0.71 0.501015
Target:  5'- gCCAGCgccugcacgucacUGCUGGCGCGcauCGAGCGCc -3'
miRNA:   3'- -GGUCGa------------ACGACCGUGCac-GCUUGUGu -5'
19234 3' -53.9 NC_004684.1 + 62089 0.71 0.513559
Target:  5'- gCCAGCgcgucgucguaGCUGGCGCuG-GCGAACAUg -3'
miRNA:   3'- -GGUCGaa---------CGACCGUG-CaCGCUUGUGu -5'
19234 3' -53.9 NC_004684.1 + 1686 0.71 0.515662
Target:  5'- aCCAgGCcgaGCUGGCGCGcauCGAGCGCAa -3'
miRNA:   3'- -GGU-CGaa-CGACCGUGCac-GCUUGUGU- -5'
19234 3' -53.9 NC_004684.1 + 56092 0.71 0.547598
Target:  5'- gCGGCaUGCUGGCG-GUgGCGGugGCAc -3'
miRNA:   3'- gGUCGaACGACCGUgCA-CGCUugUGU- -5'
19234 3' -53.9 NC_004684.1 + 23638 0.7 0.569234
Target:  5'- cCCGGcCUUGCUGGCAcCGcUGCugaccGggUACAc -3'
miRNA:   3'- -GGUC-GAACGACCGU-GC-ACG-----CuuGUGU- -5'
19234 3' -53.9 NC_004684.1 + 46692 0.7 0.569234
Target:  5'- -uGGCggUGCggUGGCGCGcccugUGCGAGCGCGc -3'
miRNA:   3'- ggUCGa-ACG--ACCGUGC-----ACGCUUGUGU- -5'
19234 3' -53.9 NC_004684.1 + 40895 0.7 0.580132
Target:  5'- gUCAGCacgUGCUcgccaGGCAUGgcaugGCGGGCACGc -3'
miRNA:   3'- -GGUCGa--ACGA-----CCGUGCa----CGCUUGUGU- -5'
19234 3' -53.9 NC_004684.1 + 23571 0.7 0.613053
Target:  5'- aCAGCcUGCcgGGC-CGcGCGAACACc -3'
miRNA:   3'- gGUCGaACGa-CCGuGCaCGCUUGUGu -5'
19234 3' -53.9 NC_004684.1 + 26568 0.7 0.613053
Target:  5'- uCCGGCgcgccCUGGCGCGcgGCGGuguGCGCGg -3'
miRNA:   3'- -GGUCGaac--GACCGUGCa-CGCU---UGUGU- -5'
19234 3' -53.9 NC_004684.1 + 22723 0.7 0.617459
Target:  5'- -aGGCcgugGCUGGCACGcGCGAccgguucguggaccuGCGCAa -3'
miRNA:   3'- ggUCGaa--CGACCGUGCaCGCU---------------UGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.