miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19234 3' -53.9 NC_004684.1 + 40057 0.68 0.722329
Target:  5'- aCGGCUcucgucGUUGGUcaGCGUGCGGuCGCAg -3'
miRNA:   3'- gGUCGAa-----CGACCG--UGCACGCUuGUGU- -5'
19234 3' -53.9 NC_004684.1 + 23571 0.7 0.613053
Target:  5'- aCAGCcUGCcgGGC-CGcGCGAACACc -3'
miRNA:   3'- gGUCGaACGa-CCGuGCaCGCUUGUGu -5'
19234 3' -53.9 NC_004684.1 + 22723 0.7 0.617459
Target:  5'- -aGGCcgugGCUGGCACGcGCGAccgguucguggaccuGCGCAa -3'
miRNA:   3'- ggUCGaa--CGACCGUGCaCGCU---------------UGUGU- -5'
19234 3' -53.9 NC_004684.1 + 9550 0.69 0.635099
Target:  5'- gCCGGUUggaGCcGGUGCGccGCGAACACGu -3'
miRNA:   3'- -GGUCGAa--CGaCCGUGCa-CGCUUGUGU- -5'
19234 3' -53.9 NC_004684.1 + 46323 0.69 0.635099
Target:  5'- gCCAGCgucUGgaGGCug--GCGAACACGa -3'
miRNA:   3'- -GGUCGa--ACgaCCGugcaCGCUUGUGU- -5'
19234 3' -53.9 NC_004684.1 + 3367 0.69 0.679074
Target:  5'- uCCAGCacGcCUGGCGCaagggGUGUGAgguGCACAu -3'
miRNA:   3'- -GGUCGaaC-GACCGUG-----CACGCU---UGUGU- -5'
19234 3' -53.9 NC_004684.1 + 18278 0.68 0.711621
Target:  5'- cCCGGCcgccUGCUGGCACcgaccgGCaagaagGAGCACAu -3'
miRNA:   3'- -GGUCGa---ACGACCGUGca----CG------CUUGUGU- -5'
19234 3' -53.9 NC_004684.1 + 43475 0.68 0.711621
Target:  5'- gCGGCggcaGCaGGUGCG-GCGGGCGCAg -3'
miRNA:   3'- gGUCGaa--CGaCCGUGCaCGCUUGUGU- -5'
19234 3' -53.9 NC_004684.1 + 28716 0.68 0.722329
Target:  5'- uCCAgGCUUuCUGGCGCGUcuGCG-GCACc -3'
miRNA:   3'- -GGU-CGAAcGACCGUGCA--CGCuUGUGu -5'
19234 3' -53.9 NC_004684.1 + 26568 0.7 0.613053
Target:  5'- uCCGGCgcgccCUGGCGCGcgGCGGuguGCGCGg -3'
miRNA:   3'- -GGUCGaac--GACCGUGCa-CGCU---UGUGU- -5'
19234 3' -53.9 NC_004684.1 + 23638 0.7 0.569234
Target:  5'- cCCGGcCUUGCUGGCAcCGcUGCugaccGggUACAc -3'
miRNA:   3'- -GGUC-GAACGACCGU-GC-ACG-----CuuGUGU- -5'
19234 3' -53.9 NC_004684.1 + 46692 0.7 0.569234
Target:  5'- -uGGCggUGCggUGGCGCGcccugUGCGAGCGCGc -3'
miRNA:   3'- ggUCGa-ACG--ACCGUGC-----ACGCUUGUGU- -5'
19234 3' -53.9 NC_004684.1 + 34073 0.78 0.212703
Target:  5'- aCCGGCgaccCUGGCGCG-GCGGGCGCGa -3'
miRNA:   3'- -GGUCGaac-GACCGUGCaCGCUUGUGU- -5'
19234 3' -53.9 NC_004684.1 + 15288 0.75 0.328391
Target:  5'- aCCAGCccgacguuugGCUGGCGCGacGCGGugGCAa -3'
miRNA:   3'- -GGUCGaa--------CGACCGUGCa-CGCUugUGU- -5'
19234 3' -53.9 NC_004684.1 + 55800 0.74 0.397069
Target:  5'- aCCGGgUgguccGgUGaGCGCGUGCGAGCACGg -3'
miRNA:   3'- -GGUCgAa----CgAC-CGUGCACGCUUGUGU- -5'
19234 3' -53.9 NC_004684.1 + 57880 0.72 0.464241
Target:  5'- gCCAGaccggUGCUGGCugGUGgcCGGGCugAa -3'
miRNA:   3'- -GGUCga---ACGACCGugCAC--GCUUGugU- -5'
19234 3' -53.9 NC_004684.1 + 60680 0.72 0.474318
Target:  5'- uCCAGCUUGgaGGCGuCG-GUGAuCACGg -3'
miRNA:   3'- -GGUCGAACgaCCGU-GCaCGCUuGUGU- -5'
19234 3' -53.9 NC_004684.1 + 44454 0.72 0.494794
Target:  5'- aCCAGCUUgagcacGCUGGcCACcUGCGuGCGCGu -3'
miRNA:   3'- -GGUCGAA------CGACC-GUGcACGCuUGUGU- -5'
19234 3' -53.9 NC_004684.1 + 62089 0.71 0.513559
Target:  5'- gCCAGCgcgucgucguaGCUGGCGCuG-GCGAACAUg -3'
miRNA:   3'- -GGUCGaa---------CGACCGUG-CaCGCUUGUGu -5'
19234 3' -53.9 NC_004684.1 + 56092 0.71 0.547598
Target:  5'- gCGGCaUGCUGGCG-GUgGCGGugGCAc -3'
miRNA:   3'- gGUCGaACGACCGUgCA-CGCUugUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.