miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19234 3' -53.9 NC_004684.1 + 1059 0.66 0.803784
Target:  5'- aCCGGUUgUGCUGGCugGcgGCGcugGACGu- -3'
miRNA:   3'- -GGUCGA-ACGACCGugCa-CGC---UUGUgu -5'
19234 3' -53.9 NC_004684.1 + 1686 0.71 0.515662
Target:  5'- aCCAgGCcgaGCUGGCGCGcauCGAGCGCAa -3'
miRNA:   3'- -GGU-CGaa-CGACCGUGCac-GCUUGUGU- -5'
19234 3' -53.9 NC_004684.1 + 3367 0.69 0.679074
Target:  5'- uCCAGCacGcCUGGCGCaagggGUGUGAgguGCACAu -3'
miRNA:   3'- -GGUCGaaC-GACCGUG-----CACGCU---UGUGU- -5'
19234 3' -53.9 NC_004684.1 + 5869 0.71 0.501015
Target:  5'- gCCAGCgccugcacgucacUGCUGGCGCGcauCGAGCGCc -3'
miRNA:   3'- -GGUCGa------------ACGACCGUGCac-GCUUGUGu -5'
19234 3' -53.9 NC_004684.1 + 6938 0.66 0.803784
Target:  5'- cCCGGCaUGCUGGC-CGagGuCGAACcCGg -3'
miRNA:   3'- -GGUCGaACGACCGuGCa-C-GCUUGuGU- -5'
19234 3' -53.9 NC_004684.1 + 7561 0.67 0.774286
Target:  5'- aCCGGCcccgGgUGGCGCugGUGCGGcugguGCGCGg -3'
miRNA:   3'- -GGUCGaa--CgACCGUG--CACGCU-----UGUGU- -5'
19234 3' -53.9 NC_004684.1 + 8992 0.67 0.784281
Target:  5'- aCCAGg-UGCUGcGCACGgugcugaugcGCGAAgGCAu -3'
miRNA:   3'- -GGUCgaACGAC-CGUGCa---------CGCUUgUGU- -5'
19234 3' -53.9 NC_004684.1 + 9550 0.69 0.635099
Target:  5'- gCCGGUUggaGCcGGUGCGccGCGAACACGu -3'
miRNA:   3'- -GGUCGAa--CGaCCGUGCa-CGCUUGUGU- -5'
19234 3' -53.9 NC_004684.1 + 10658 0.69 0.66812
Target:  5'- gCCGGUUcccgUGCUGGCGCG-GCaucAGCACc -3'
miRNA:   3'- -GGUCGA----ACGACCGUGCaCGc--UUGUGu -5'
19234 3' -53.9 NC_004684.1 + 14721 0.66 0.81327
Target:  5'- aCCGGgUcaaagaggUGCUGGcCACcUGgGAGCGCAa -3'
miRNA:   3'- -GGUCgA--------ACGACC-GUGcACgCUUGUGU- -5'
19234 3' -53.9 NC_004684.1 + 15040 0.66 0.794117
Target:  5'- aCCGGCUc-CUGGacgACGUGgGGACGCc -3'
miRNA:   3'- -GGUCGAacGACCg--UGCACgCUUGUGu -5'
19234 3' -53.9 NC_004684.1 + 15288 0.75 0.328391
Target:  5'- aCCAGCccgacguuugGCUGGCGCGacGCGGugGCAa -3'
miRNA:   3'- -GGUCGaa--------CGACCGUGCa-CGCUugUGU- -5'
19234 3' -53.9 NC_004684.1 + 18278 0.68 0.711621
Target:  5'- cCCGGCcgccUGCUGGCACcgaccgGCaagaagGAGCACAu -3'
miRNA:   3'- -GGUCGa---ACGACCGUGca----CG------CUUGUGU- -5'
19234 3' -53.9 NC_004684.1 + 20435 0.66 0.802825
Target:  5'- aUCAGCcuggcGCUGuGCACGgcgGCGAagaugcuGCGCAc -3'
miRNA:   3'- -GGUCGaa---CGAC-CGUGCa--CGCU-------UGUGU- -5'
19234 3' -53.9 NC_004684.1 + 22092 0.67 0.784281
Target:  5'- gCAGCgacgGCUGGCugGUGUuccuguggccgGAaaccggACGCAa -3'
miRNA:   3'- gGUCGaa--CGACCGugCACG-----------CU------UGUGU- -5'
19234 3' -53.9 NC_004684.1 + 22723 0.7 0.617459
Target:  5'- -aGGCcgugGCUGGCACGcGCGAccgguucguggaccuGCGCAa -3'
miRNA:   3'- ggUCGaa--CGACCGUGCaCGCU---------------UGUGU- -5'
19234 3' -53.9 NC_004684.1 + 23571 0.7 0.613053
Target:  5'- aCAGCcUGCcgGGC-CGcGCGAACACc -3'
miRNA:   3'- gGUCGaACGa-CCGuGCaCGCUUGUGu -5'
19234 3' -53.9 NC_004684.1 + 23638 0.7 0.569234
Target:  5'- cCCGGcCUUGCUGGCAcCGcUGCugaccGggUACAc -3'
miRNA:   3'- -GGUC-GAACGACCGU-GC-ACG-----CuuGUGU- -5'
19234 3' -53.9 NC_004684.1 + 26568 0.7 0.613053
Target:  5'- uCCGGCgcgccCUGGCGCGcgGCGGuguGCGCGg -3'
miRNA:   3'- -GGUCGaac--GACCGUGCa-CGCU---UGUGU- -5'
19234 3' -53.9 NC_004684.1 + 26720 0.66 0.840543
Target:  5'- gCCAcCUUGCUGGC-CGaGCGcGACugGc -3'
miRNA:   3'- -GGUcGAACGACCGuGCaCGC-UUGugU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.