miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19236 5' -58.8 NC_004684.1 + 53631 1.13 0.000336
Target:  5'- cGGACACCCGCAUGCGCUGGAGCACCCc -3'
miRNA:   3'- -CCUGUGGGCGUACGCGACCUCGUGGG- -5'
19236 5' -58.8 NC_004684.1 + 31105 0.87 0.024747
Target:  5'- aGGACGCCgCGCAgGCGCUGGAGgACCUu -3'
miRNA:   3'- -CCUGUGG-GCGUaCGCGACCUCgUGGG- -5'
19236 5' -58.8 NC_004684.1 + 5092 0.87 0.026192
Target:  5'- cGGAgGCCCGCGcgGCGCUGGAGCagcGCCUg -3'
miRNA:   3'- -CCUgUGGGCGUa-CGCGACCUCG---UGGG- -5'
19236 5' -58.8 NC_004684.1 + 51820 0.8 0.074009
Target:  5'- aGGcCGCgCGCGcUGCGCUGGAGCaucACCCa -3'
miRNA:   3'- -CCuGUGgGCGU-ACGCGACCUCG---UGGG- -5'
19236 5' -58.8 NC_004684.1 + 44470 0.78 0.108625
Target:  5'- uGGcCACCUGCGUGCGCgUGGAcCACCg -3'
miRNA:   3'- -CCuGUGGGCGUACGCG-ACCUcGUGGg -5'
19236 5' -58.8 NC_004684.1 + 19467 0.77 0.131183
Target:  5'- cGGugGCCCGCGcgacaUGCGCcccUGGAGCcaGCCg -3'
miRNA:   3'- -CCugUGGGCGU-----ACGCG---ACCUCG--UGGg -5'
19236 5' -58.8 NC_004684.1 + 57093 0.76 0.145945
Target:  5'- uGGcCGCCCGCAUGCacuggacCUGGAGCgACCg -3'
miRNA:   3'- -CCuGUGGGCGUACGc------GACCUCG-UGGg -5'
19236 5' -58.8 NC_004684.1 + 14565 0.76 0.153882
Target:  5'- uGGACACCUG-GUGCGCcGGGGcCACCg -3'
miRNA:   3'- -CCUGUGGGCgUACGCGaCCUC-GUGGg -5'
19236 5' -58.8 NC_004684.1 + 61938 0.75 0.166521
Target:  5'- cGGCACCCGCcggGC-CUGGuGCACCg -3'
miRNA:   3'- cCUGUGGGCGua-CGcGACCuCGUGGg -5'
19236 5' -58.8 NC_004684.1 + 1622 0.75 0.180084
Target:  5'- cGGCACCUGCAccgGCGCaaccgGGuaccGGCGCCCa -3'
miRNA:   3'- cCUGUGGGCGUa--CGCGa----CC----UCGUGGG- -5'
19236 5' -58.8 NC_004684.1 + 53604 0.74 0.215581
Target:  5'- cGACACCgCGCuggagGCGCagguuggucgccUGGAGCGCCa -3'
miRNA:   3'- cCUGUGG-GCGua---CGCG------------ACCUCGUGGg -5'
19236 5' -58.8 NC_004684.1 + 15513 0.74 0.215581
Target:  5'- aGGcCGCCCGgGgccggGCGCUGGAgGCGCUg -3'
miRNA:   3'- -CCuGUGGGCgUa----CGCGACCU-CGUGGg -5'
19236 5' -58.8 NC_004684.1 + 1575 0.73 0.221117
Target:  5'- uGGuGCGCCUGUcUGCGCU-GAGCGCCa -3'
miRNA:   3'- -CC-UGUGGGCGuACGCGAcCUCGUGGg -5'
19236 5' -58.8 NC_004684.1 + 59342 0.73 0.238452
Target:  5'- -cGCACCCuGCugGCGCUGGAGgACCg -3'
miRNA:   3'- ccUGUGGG-CGuaCGCGACCUCgUGGg -5'
19236 5' -58.8 NC_004684.1 + 10782 0.73 0.244478
Target:  5'- cGACACCCGCGacgGCGUcGGcaccguagcGGCAUCCg -3'
miRNA:   3'- cCUGUGGGCGUa--CGCGaCC---------UCGUGGG- -5'
19236 5' -58.8 NC_004684.1 + 64021 0.72 0.269854
Target:  5'- -cACACCCcuuGCGccaggcGUGCUGGAGCACCg -3'
miRNA:   3'- ccUGUGGG---CGUa-----CGCGACCUCGUGGg -5'
19236 5' -58.8 NC_004684.1 + 7374 0.72 0.276521
Target:  5'- -cGCAUCCGagcUGUGCUGGuggauGCGCCCg -3'
miRNA:   3'- ccUGUGGGCgu-ACGCGACCu----CGUGGG- -5'
19236 5' -58.8 NC_004684.1 + 16955 0.71 0.302331
Target:  5'- cGAgGCCUGCAagcgggccugcaccUGCuGCUGGuGUACCCc -3'
miRNA:   3'- cCUgUGGGCGU--------------ACG-CGACCuCGUGGG- -5'
19236 5' -58.8 NC_004684.1 + 45258 0.71 0.304503
Target:  5'- uGGAUGCCgCGCuggacGCGCU-GAGCugCCa -3'
miRNA:   3'- -CCUGUGG-GCGua---CGCGAcCUCGugGG- -5'
19236 5' -58.8 NC_004684.1 + 5605 0.71 0.308883
Target:  5'- gGGGCcgagcugGCgCGCAUgGUGCUGGAGCuggacgccugguucGCCCg -3'
miRNA:   3'- -CCUG-------UGgGCGUA-CGCGACCUCG--------------UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.