miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19236 5' -58.8 NC_004684.1 + 200 0.68 0.465814
Target:  5'- aGGugGCCCugGCAa-CGCU-GAGCACCUa -3'
miRNA:   3'- -CCugUGGG--CGUacGCGAcCUCGUGGG- -5'
19236 5' -58.8 NC_004684.1 + 1033 0.7 0.383732
Target:  5'- -aACACCCGCGUcGCcCUGGc-CGCCCg -3'
miRNA:   3'- ccUGUGGGCGUA-CGcGACCucGUGGG- -5'
19236 5' -58.8 NC_004684.1 + 1055 0.66 0.576932
Target:  5'- cGGCACCgGU-UGUGCUGGcuggcGGCGCUg -3'
miRNA:   3'- cCUGUGGgCGuACGCGACC-----UCGUGGg -5'
19236 5' -58.8 NC_004684.1 + 1106 0.7 0.358582
Target:  5'- cGGGCACCCGCAacgUGgccgucCGCUGGGacgacgccGCGCUg -3'
miRNA:   3'- -CCUGUGGGCGU---AC------GCGACCU--------CGUGGg -5'
19236 5' -58.8 NC_004684.1 + 1246 0.66 0.608474
Target:  5'- cGGuCGCCCgGCcccggcccagAUGCGCUGGcuGGUGgCCa -3'
miRNA:   3'- -CCuGUGGG-CG----------UACGCGACC--UCGUgGG- -5'
19236 5' -58.8 NC_004684.1 + 1494 0.66 0.608474
Target:  5'- aGGugGCCCGCcuguUGCGCgaccacuacGGcGUcaACCCc -3'
miRNA:   3'- -CCugUGGGCGu---ACGCGa--------CCuCG--UGGG- -5'
19236 5' -58.8 NC_004684.1 + 1546 0.67 0.545766
Target:  5'- -uGCGCUCGCAUGCGgugcacCUGuGAGcCGCCg -3'
miRNA:   3'- ccUGUGGGCGUACGC------GAC-CUC-GUGGg -5'
19236 5' -58.8 NC_004684.1 + 1575 0.73 0.221117
Target:  5'- uGGuGCGCCUGUcUGCGCU-GAGCGCCa -3'
miRNA:   3'- -CC-UGUGGGCGuACGCGAcCUCGUGGg -5'
19236 5' -58.8 NC_004684.1 + 1622 0.75 0.180084
Target:  5'- cGGCACCUGCAccgGCGCaaccgGGuaccGGCGCCCa -3'
miRNA:   3'- cCUGUGGGCGUa--CGCGa----CC----UCGUGGG- -5'
19236 5' -58.8 NC_004684.1 + 1761 0.67 0.535494
Target:  5'- -cGCACCUGCAUcaGUccaUGGAGCGCgCCa -3'
miRNA:   3'- ccUGUGGGCGUAcgCG---ACCUCGUG-GG- -5'
19236 5' -58.8 NC_004684.1 + 1764 0.66 0.608474
Target:  5'- cGGAgCugCgCGCGUG-GCUGGA-CGCCa -3'
miRNA:   3'- -CCU-GugG-GCGUACgCGACCUcGUGGg -5'
19236 5' -58.8 NC_004684.1 + 1985 0.68 0.492175
Target:  5'- uGGACagcucgaacugcugGCCUGg--GCGCUGGAcCGCCCc -3'
miRNA:   3'- -CCUG--------------UGGGCguaCGCGACCUcGUGGG- -5'
19236 5' -58.8 NC_004684.1 + 2065 0.66 0.597931
Target:  5'- cGugGCCUGCcugGCGCUGGccgugguGCACa- -3'
miRNA:   3'- cCugUGGGCGua-CGCGACCu------CGUGgg -5'
19236 5' -58.8 NC_004684.1 + 2519 0.71 0.326883
Target:  5'- cGACGCCCgGCAcUGCggacGCUGcGGCACCUg -3'
miRNA:   3'- cCUGUGGG-CGU-ACG----CGACcUCGUGGG- -5'
19236 5' -58.8 NC_004684.1 + 2632 0.69 0.441139
Target:  5'- cGGugGCCaaCGCAUGagcgaGCUGGuguuccugacggucaAGCACCa -3'
miRNA:   3'- -CCugUGG--GCGUACg----CGACC---------------UCGUGGg -5'
19236 5' -58.8 NC_004684.1 + 3176 0.66 0.608474
Target:  5'- gGGAUgcaACCUGuCGUGUaGCUGGuGCgacACCCc -3'
miRNA:   3'- -CCUG---UGGGC-GUACG-CGACCuCG---UGGG- -5'
19236 5' -58.8 NC_004684.1 + 3201 0.67 0.52529
Target:  5'- cGGcACACCgGCAacgccgacgUGCGcCUGGAagagguGCGCCg -3'
miRNA:   3'- -CC-UGUGGgCGU---------ACGC-GACCU------CGUGGg -5'
19236 5' -58.8 NC_004684.1 + 3883 0.66 0.58112
Target:  5'- cGACGCCaggccgcccugcuggCGCAggcGCaGCUGGAggccucGCGCCCc -3'
miRNA:   3'- cCUGUGG---------------GCGUa--CG-CGACCU------CGUGGG- -5'
19236 5' -58.8 NC_004684.1 + 4034 0.67 0.535494
Target:  5'- cGGcCGCUCG-GUGCGCUGGgcGGuCACCg -3'
miRNA:   3'- -CCuGUGGGCgUACGCGACC--UC-GUGGg -5'
19236 5' -58.8 NC_004684.1 + 4163 0.66 0.597931
Target:  5'- uGGACgcgaucaugGCCCGguUGCGCccgGcGGGCGCg- -3'
miRNA:   3'- -CCUG---------UGGGCguACGCGa--C-CUCGUGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.