miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19236 5' -58.8 NC_004684.1 + 2632 0.69 0.441139
Target:  5'- cGGugGCCaaCGCAUGagcgaGCUGGuguuccugacggucaAGCACCa -3'
miRNA:   3'- -CCugUGG--GCGUACg----CGACC---------------UCGUGGg -5'
19236 5' -58.8 NC_004684.1 + 2519 0.71 0.326883
Target:  5'- cGACGCCCgGCAcUGCggacGCUGcGGCACCUg -3'
miRNA:   3'- cCUGUGGG-CGU-ACG----CGACcUCGUGGG- -5'
19236 5' -58.8 NC_004684.1 + 10202 0.7 0.35046
Target:  5'- -aGCGCCaGCGaGCGCUGGAGgUGCCUg -3'
miRNA:   3'- ccUGUGGgCGUaCGCGACCUC-GUGGG- -5'
19236 5' -58.8 NC_004684.1 + 60235 0.7 0.358582
Target:  5'- aGGuGCACCCGCAgGCGgUGGc-CACCUu -3'
miRNA:   3'- -CC-UGUGGGCGUaCGCgACCucGUGGG- -5'
19236 5' -58.8 NC_004684.1 + 41820 0.7 0.366836
Target:  5'- uGGAcCACCCGgAgGCGCUGGc-CACCg -3'
miRNA:   3'- -CCU-GUGGGCgUaCGCGACCucGUGGg -5'
19236 5' -58.8 NC_004684.1 + 7558 0.69 0.410025
Target:  5'- uGGACcggcCCCGgGUgGCGCUGGuGCGgCUg -3'
miRNA:   3'- -CCUGu---GGGCgUA-CGCGACCuCGUgGG- -5'
19236 5' -58.8 NC_004684.1 + 52869 0.69 0.419034
Target:  5'- uGGuGCACCgGUacAUGcCGgUGGcAGCACCCa -3'
miRNA:   3'- -CC-UGUGGgCG--UAC-GCgACC-UCGUGGG- -5'
19236 5' -58.8 NC_004684.1 + 20226 0.69 0.428164
Target:  5'- --uCGCCUGgGUGCGcCUGGcGCGCCg -3'
miRNA:   3'- ccuGUGGGCgUACGC-GACCuCGUGGg -5'
19236 5' -58.8 NC_004684.1 + 11592 0.69 0.437409
Target:  5'- ---aGCCCGCcgGUGCGcCUGGAcgacgGCACCg -3'
miRNA:   3'- ccugUGGGCG--UACGC-GACCU-----CGUGGg -5'
19236 5' -58.8 NC_004684.1 + 7374 0.72 0.276521
Target:  5'- -cGCAUCCGagcUGUGCUGGuggauGCGCCCg -3'
miRNA:   3'- ccUGUGGGCgu-ACGCGACCu----CGUGGG- -5'
19236 5' -58.8 NC_004684.1 + 10782 0.73 0.244478
Target:  5'- cGACACCCGCGacgGCGUcGGcaccguagcGGCAUCCg -3'
miRNA:   3'- cCUGUGGGCGUa--CGCGaCC---------UCGUGGG- -5'
19236 5' -58.8 NC_004684.1 + 1575 0.73 0.221117
Target:  5'- uGGuGCGCCUGUcUGCGCU-GAGCGCCa -3'
miRNA:   3'- -CC-UGUGGGCGuACGCGAcCUCGUGGg -5'
19236 5' -58.8 NC_004684.1 + 31105 0.87 0.024747
Target:  5'- aGGACGCCgCGCAgGCGCUGGAGgACCUu -3'
miRNA:   3'- -CCUGUGG-GCGUaCGCGACCUCgUGGG- -5'
19236 5' -58.8 NC_004684.1 + 51820 0.8 0.074009
Target:  5'- aGGcCGCgCGCGcUGCGCUGGAGCaucACCCa -3'
miRNA:   3'- -CCuGUGgGCGU-ACGCGACCUCG---UGGG- -5'
19236 5' -58.8 NC_004684.1 + 44470 0.78 0.108625
Target:  5'- uGGcCACCUGCGUGCGCgUGGAcCACCg -3'
miRNA:   3'- -CCuGUGGGCGUACGCG-ACCUcGUGGg -5'
19236 5' -58.8 NC_004684.1 + 19467 0.77 0.131183
Target:  5'- cGGugGCCCGCGcgacaUGCGCcccUGGAGCcaGCCg -3'
miRNA:   3'- -CCugUGGGCGU-----ACGCG---ACCUCG--UGGg -5'
19236 5' -58.8 NC_004684.1 + 57093 0.76 0.145945
Target:  5'- uGGcCGCCCGCAUGCacuggacCUGGAGCgACCg -3'
miRNA:   3'- -CCuGUGGGCGUACGc------GACCUCG-UGGg -5'
19236 5' -58.8 NC_004684.1 + 61938 0.75 0.166521
Target:  5'- cGGCACCCGCcggGC-CUGGuGCACCg -3'
miRNA:   3'- cCUGUGGGCGua-CGcGACCuCGUGGg -5'
19236 5' -58.8 NC_004684.1 + 1622 0.75 0.180084
Target:  5'- cGGCACCUGCAccgGCGCaaccgGGuaccGGCGCCCa -3'
miRNA:   3'- cCUGUGGGCGUa--CGCGa----CC----UCGUGGG- -5'
19236 5' -58.8 NC_004684.1 + 15513 0.74 0.215581
Target:  5'- aGGcCGCCCGgGgccggGCGCUGGAgGCGCUg -3'
miRNA:   3'- -CCuGUGGGCgUa----CGCGACCU-CGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.