miRNA display CGI


Results 1 - 20 of 84 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19237 5' -53.9 NC_004684.1 + 54712 1.13 0.001091
Target:  5'- aGACGGUGUCGACCGUUUUCGCAGGCCa -3'
miRNA:   3'- -CUGCCACAGCUGGCAAAAGCGUCCGG- -5'
19237 5' -53.9 NC_004684.1 + 39476 0.78 0.244956
Target:  5'- aGAUGGUGUCGcCCaGgaacucgCGCAGGCCg -3'
miRNA:   3'- -CUGCCACAGCuGG-Caaaa---GCGUCCGG- -5'
19237 5' -53.9 NC_004684.1 + 16758 0.78 0.244956
Target:  5'- cGGCGGUGUCGACUGguucugUGUcGGCCa -3'
miRNA:   3'- -CUGCCACAGCUGGCaaaa--GCGuCCGG- -5'
19237 5' -53.9 NC_004684.1 + 40383 0.77 0.292126
Target:  5'- cGGCGGUGgCGGCC---UUCgGCAGGCCg -3'
miRNA:   3'- -CUGCCACaGCUGGcaaAAG-CGUCCGG- -5'
19237 5' -53.9 NC_004684.1 + 60701 0.76 0.314419
Target:  5'- cGACGGUggccagGUCGACCug---UGCAGGCCa -3'
miRNA:   3'- -CUGCCA------CAGCUGGcaaaaGCGUCCGG- -5'
19237 5' -53.9 NC_004684.1 + 13288 0.76 0.32213
Target:  5'- cGCGGUGUCGACCGUUUcccuccgaCGCcuugacccGGGUCa -3'
miRNA:   3'- cUGCCACAGCUGGCAAAa-------GCG--------UCCGG- -5'
19237 5' -53.9 NC_004684.1 + 7861 0.76 0.337974
Target:  5'- uGGCGGUGcagGACCuGUg--CGCAGGCCu -3'
miRNA:   3'- -CUGCCACag-CUGG-CAaaaGCGUCCGG- -5'
19237 5' -53.9 NC_004684.1 + 49275 0.73 0.473902
Target:  5'- uGGCGGUGUCcacACCGgccucgcgcUCGguGGCCu -3'
miRNA:   3'- -CUGCCACAGc--UGGCaaa------AGCguCCGG- -5'
19237 5' -53.9 NC_004684.1 + 24878 0.73 0.48393
Target:  5'- cGGCGGUGagCGcGCCGUUgaUCGCGuuGGCCu -3'
miRNA:   3'- -CUGCCACa-GC-UGGCAAa-AGCGU--CCGG- -5'
19237 5' -53.9 NC_004684.1 + 58237 0.72 0.49406
Target:  5'- aGACGGUGUCG-UCGg---C-CAGGCCg -3'
miRNA:   3'- -CUGCCACAGCuGGCaaaaGcGUCCGG- -5'
19237 5' -53.9 NC_004684.1 + 22847 0.72 0.5146
Target:  5'- -cCGGccUGcCGACCGggUUCGUccGGGCCa -3'
miRNA:   3'- cuGCC--ACaGCUGGCaaAAGCG--UCCGG- -5'
19237 5' -53.9 NC_004684.1 + 23481 0.72 0.525
Target:  5'- cGGCGGUGgUGACCGcUUUC-CuGGCCu -3'
miRNA:   3'- -CUGCCACaGCUGGCaAAAGcGuCCGG- -5'
19237 5' -53.9 NC_004684.1 + 57599 0.72 0.525
Target:  5'- cGACGGUGgUGACCGUgcacgaGCGguacGGCCa -3'
miRNA:   3'- -CUGCCACaGCUGGCAaaag--CGU----CCGG- -5'
19237 5' -53.9 NC_004684.1 + 57558 0.71 0.546031
Target:  5'- cGGCGGUGaUCGACgGcaagaCGguGGCCu -3'
miRNA:   3'- -CUGCCAC-AGCUGgCaaaa-GCguCCGG- -5'
19237 5' -53.9 NC_004684.1 + 50957 0.71 0.567324
Target:  5'- cGAUGGUGUgCG-CCagcacgUCGUAGGCCg -3'
miRNA:   3'- -CUGCCACA-GCuGGcaaa--AGCGUCCGG- -5'
19237 5' -53.9 NC_004684.1 + 56606 0.71 0.588821
Target:  5'- uACGGUGcCGacGCCGUcgcgggugUCGCGGGCa -3'
miRNA:   3'- cUGCCACaGC--UGGCAaa------AGCGUCCGg -5'
19237 5' -53.9 NC_004684.1 + 22811 0.7 0.621311
Target:  5'- cACGcugGUCGACCGgcagUUCccggcgguGCAGGCCg -3'
miRNA:   3'- cUGCca-CAGCUGGCaa--AAG--------CGUCCGG- -5'
19237 5' -53.9 NC_004684.1 + 20350 0.7 0.621311
Target:  5'- -cCGGUG-C-ACCGUcaccgCGCAGGCCa -3'
miRNA:   3'- cuGCCACaGcUGGCAaaa--GCGUCCGG- -5'
19237 5' -53.9 NC_004684.1 + 51983 0.7 0.621311
Target:  5'- cACGGUGUCGGCCa---UCGCGcccuGCCg -3'
miRNA:   3'- cUGCCACAGCUGGcaaaAGCGUc---CGG- -5'
19237 5' -53.9 NC_004684.1 + 20759 0.7 0.621311
Target:  5'- aGGCGGUGcCGuccacACCGgaggCGguGGCCc -3'
miRNA:   3'- -CUGCCACaGC-----UGGCaaaaGCguCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.