miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19237 5' -53.9 NC_004684.1 + 1211 0.66 0.860872
Target:  5'- cGCGGcGUCGACU----UCGUcGGCCu -3'
miRNA:   3'- cUGCCaCAGCUGGcaaaAGCGuCCGG- -5'
19237 5' -53.9 NC_004684.1 + 3800 0.66 0.844213
Target:  5'- aGGCGGUaaCcACCGccgcgccgCGCAGGCCg -3'
miRNA:   3'- -CUGCCAcaGcUGGCaaaa----GCGUCCGG- -5'
19237 5' -53.9 NC_004684.1 + 4823 0.66 0.860872
Target:  5'- --aGGUGUCGAuuCCGgc--CGacaAGGCCa -3'
miRNA:   3'- cugCCACAGCU--GGCaaaaGCg--UCCGG- -5'
19237 5' -53.9 NC_004684.1 + 5840 0.7 0.653882
Target:  5'- uGGCGGUGUucgaggaccaggCGugCGac-UgGCAGGCCg -3'
miRNA:   3'- -CUGCCACA------------GCugGCaaaAgCGUCCGG- -5'
19237 5' -53.9 NC_004684.1 + 7861 0.76 0.337974
Target:  5'- uGGCGGUGcagGACCuGUg--CGCAGGCCu -3'
miRNA:   3'- -CUGCCACag-CUGG-CAaaaGCGUCCGG- -5'
19237 5' -53.9 NC_004684.1 + 8505 0.69 0.696987
Target:  5'- aGACGGUGcCGugCugggauuguggcGUgcugUGCGGGCCg -3'
miRNA:   3'- -CUGCCACaGCugG------------CAaaa-GCGUCCGG- -5'
19237 5' -53.9 NC_004684.1 + 9910 0.66 0.852655
Target:  5'- uGCGGcgcuUGUCGACgGUgg--GCAGGaCCg -3'
miRNA:   3'- cUGCC----ACAGCUGgCAaaagCGUCC-GG- -5'
19237 5' -53.9 NC_004684.1 + 10078 0.68 0.759586
Target:  5'- uACGGccaGUCGACCGggcaggGCuGGCCg -3'
miRNA:   3'- cUGCCa--CAGCUGGCaaaag-CGuCCGG- -5'
19237 5' -53.9 NC_004684.1 + 13288 0.76 0.32213
Target:  5'- cGCGGUGUCGACCGUUUcccuccgaCGCcuugacccGGGUCa -3'
miRNA:   3'- cUGCCACAGCUGGCAAAa-------GCG--------UCCGG- -5'
19237 5' -53.9 NC_004684.1 + 13969 0.7 0.653882
Target:  5'- uGACGGcaGUCG-CgCGg---CGCAGGCCa -3'
miRNA:   3'- -CUGCCa-CAGCuG-GCaaaaGCGUCCGG- -5'
19237 5' -53.9 NC_004684.1 + 14211 0.66 0.826686
Target:  5'- aGCGGcgcgGUCGGCCuGUcccCGgAGGCCu -3'
miRNA:   3'- cUGCCa---CAGCUGG-CAaaaGCgUCCGG- -5'
19237 5' -53.9 NC_004684.1 + 15895 0.66 0.860872
Target:  5'- cGGCGGUGaccgGGCgGUgccaucCGCAGGUCg -3'
miRNA:   3'- -CUGCCACag--CUGgCAaaa---GCGUCCGG- -5'
19237 5' -53.9 NC_004684.1 + 16758 0.78 0.244956
Target:  5'- cGGCGGUGUCGACUGguucugUGUcGGCCa -3'
miRNA:   3'- -CUGCCACAGCUGGCaaaa--GCGuCCGG- -5'
19237 5' -53.9 NC_004684.1 + 18250 0.66 0.850984
Target:  5'- -cCGGUGUgcgaGACCGgcgacgguacgUUC-CAGGCCg -3'
miRNA:   3'- cuGCCACAg---CUGGCaa---------AAGcGUCCGG- -5'
19237 5' -53.9 NC_004684.1 + 18347 0.66 0.835553
Target:  5'- -cCGGaGcCGACCGgcggCGCGGuGCCg -3'
miRNA:   3'- cuGCCaCaGCUGGCaaaaGCGUC-CGG- -5'
19237 5' -53.9 NC_004684.1 + 18968 0.7 0.643031
Target:  5'- cGCGGUGUCGAU-GUccUUGUAGGCg -3'
miRNA:   3'- cUGCCACAGCUGgCAaaAGCGUCCGg -5'
19237 5' -53.9 NC_004684.1 + 20350 0.7 0.621311
Target:  5'- -cCGGUG-C-ACCGUcaccgCGCAGGCCa -3'
miRNA:   3'- cuGCCACaGcUGGCAaaa--GCGUCCGG- -5'
19237 5' -53.9 NC_004684.1 + 20759 0.7 0.621311
Target:  5'- aGGCGGUGcCGuccacACCGgaggCGguGGCCc -3'
miRNA:   3'- -CUGCCACaGC-----UGGCaaaaGCguCCGG- -5'
19237 5' -53.9 NC_004684.1 + 22811 0.7 0.621311
Target:  5'- cACGcugGUCGACCGgcagUUCccggcgguGCAGGCCg -3'
miRNA:   3'- cUGCca-CAGCUGGCaa--AAG--------CGUCCGG- -5'
19237 5' -53.9 NC_004684.1 + 22847 0.72 0.5146
Target:  5'- -cCGGccUGcCGACCGggUUCGUccGGGCCa -3'
miRNA:   3'- cuGCC--ACaGCUGGCaaAAGCG--UCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.