miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19237 5' -53.9 NC_004684.1 + 34249 0.67 0.789319
Target:  5'- gGGCGGcaacugccUGUgGACUG----CGCAGGCCa -3'
miRNA:   3'- -CUGCC--------ACAgCUGGCaaaaGCGUCCGG- -5'
19237 5' -53.9 NC_004684.1 + 5840 0.7 0.653882
Target:  5'- uGGCGGUGUucgaggaccaggCGugCGac-UgGCAGGCCg -3'
miRNA:   3'- -CUGCCACA------------GCugGCaaaAgCGUCCGG- -5'
19237 5' -53.9 NC_004684.1 + 13969 0.7 0.653882
Target:  5'- uGACGGcaGUCG-CgCGg---CGCAGGCCa -3'
miRNA:   3'- -CUGCCa-CAGCuG-GCaaaaGCGUCCGG- -5'
19237 5' -53.9 NC_004684.1 + 60857 0.69 0.670118
Target:  5'- cGGCGGcgaUGUCGGCCGggaggcgaugCGCAccuccucGGCCu -3'
miRNA:   3'- -CUGCC---ACAGCUGGCaaaa------GCGU-------CCGG- -5'
19237 5' -53.9 NC_004684.1 + 64042 0.69 0.673357
Target:  5'- cGGCGGUGUCGGCCucgaacaccUCGUugAGcGCCu -3'
miRNA:   3'- -CUGCCACAGCUGGcaaa-----AGCG--UC-CGG- -5'
19237 5' -53.9 NC_004684.1 + 39041 0.69 0.686276
Target:  5'- cGGCGGUGUCcAUUGUg--CGCcggguGGCCa -3'
miRNA:   3'- -CUGCCACAGcUGGCAaaaGCGu----CCGG- -5'
19237 5' -53.9 NC_004684.1 + 61692 0.68 0.759586
Target:  5'- -uUGGcGUCGguGCCGUgg--GCAGGCCg -3'
miRNA:   3'- cuGCCaCAGC--UGGCAaaagCGUCCGG- -5'
19237 5' -53.9 NC_004684.1 + 51166 0.68 0.769639
Target:  5'- -uCGGUGU-GGCCGaug-CGCcGGGCCa -3'
miRNA:   3'- cuGCCACAgCUGGCaaaaGCG-UCCGG- -5'
19237 5' -53.9 NC_004684.1 + 62719 0.67 0.779553
Target:  5'- uGCGGUaGUCGGCCacaucgUCGUGGGUg -3'
miRNA:   3'- cUGCCA-CAGCUGGcaaa--AGCGUCCGg -5'
19237 5' -53.9 NC_004684.1 + 35452 0.7 0.643031
Target:  5'- aGCGGg--CGACCGUUgcggC-CGGGCCg -3'
miRNA:   3'- cUGCCacaGCUGGCAAaa--GcGUCCGG- -5'
19237 5' -53.9 NC_004684.1 + 18968 0.7 0.643031
Target:  5'- cGCGGUGUCGAU-GUccUUGUAGGCg -3'
miRNA:   3'- cUGCCACAGCUGgCAaaAGCGUCCGg -5'
19237 5' -53.9 NC_004684.1 + 22811 0.7 0.621311
Target:  5'- cACGcugGUCGACCGgcagUUCccggcgguGCAGGCCg -3'
miRNA:   3'- cUGCca-CAGCUGGCaa--AAG--------CGUCCGG- -5'
19237 5' -53.9 NC_004684.1 + 40383 0.77 0.292126
Target:  5'- cGGCGGUGgCGGCC---UUCgGCAGGCCg -3'
miRNA:   3'- -CUGCCACaGCUGGcaaAAG-CGUCCGG- -5'
19237 5' -53.9 NC_004684.1 + 49275 0.73 0.473902
Target:  5'- uGGCGGUGUCcacACCGgccucgcgcUCGguGGCCu -3'
miRNA:   3'- -CUGCCACAGc--UGGCaaa------AGCguCCGG- -5'
19237 5' -53.9 NC_004684.1 + 23481 0.72 0.525
Target:  5'- cGGCGGUGgUGACCGcUUUC-CuGGCCu -3'
miRNA:   3'- -CUGCCACaGCUGGCaAAAGcGuCCGG- -5'
19237 5' -53.9 NC_004684.1 + 57599 0.72 0.525
Target:  5'- cGACGGUGgUGACCGUgcacgaGCGguacGGCCa -3'
miRNA:   3'- -CUGCCACaGCUGGCAaaag--CGU----CCGG- -5'
19237 5' -53.9 NC_004684.1 + 50957 0.71 0.567324
Target:  5'- cGAUGGUGUgCG-CCagcacgUCGUAGGCCg -3'
miRNA:   3'- -CUGCCACA-GCuGGcaaa--AGCGUCCGG- -5'
19237 5' -53.9 NC_004684.1 + 20759 0.7 0.621311
Target:  5'- aGGCGGUGcCGuccacACCGgaggCGguGGCCc -3'
miRNA:   3'- -CUGCCACaGC-----UGGCaaaaGCguCCGG- -5'
19237 5' -53.9 NC_004684.1 + 51983 0.7 0.621311
Target:  5'- cACGGUGUCGGCCa---UCGCGcccuGCCg -3'
miRNA:   3'- cUGCCACAGCUGGcaaaAGCGUc---CGG- -5'
19237 5' -53.9 NC_004684.1 + 20350 0.7 0.621311
Target:  5'- -cCGGUG-C-ACCGUcaccgCGCAGGCCa -3'
miRNA:   3'- cuGCCACaGcUGGCAaaa--GCGUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.