miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19241 5' -62.3 NC_004684.1 + 56490 1.09 0.000368
Target:  5'- uCGGCCUGUACGCGCCGACCCGGGUGGu -3'
miRNA:   3'- -GCCGGACAUGCGCGGCUGGGCCCACC- -5'
19241 5' -62.3 NC_004684.1 + 63924 0.8 0.054302
Target:  5'- aCGGCgUUGUACGCGCCGAaCUGGGUGc -3'
miRNA:   3'- -GCCG-GACAUGCGCGGCUgGGCCCACc -5'
19241 5' -62.3 NC_004684.1 + 44415 0.76 0.108514
Target:  5'- aCGGCCaccucGUugGCGuCCGGCCC-GGUGGc -3'
miRNA:   3'- -GCCGGa----CAugCGC-GGCUGGGcCCACC- -5'
19241 5' -62.3 NC_004684.1 + 7492 0.75 0.111391
Target:  5'- gGGCCgguucGUGCGcCGCCGcAUCgGGGUGGa -3'
miRNA:   3'- gCCGGa----CAUGC-GCGGC-UGGgCCCACC- -5'
19241 5' -62.3 NC_004684.1 + 18767 0.75 0.114338
Target:  5'- gGGCCUGggaagAgGCGCaCGGCaCCGaGGUGGg -3'
miRNA:   3'- gCCGGACa----UgCGCG-GCUG-GGC-CCACC- -5'
19241 5' -62.3 NC_004684.1 + 46115 0.74 0.130198
Target:  5'- aCGGCCgg-GCGCGCguGCCgGGGUGGu -3'
miRNA:   3'- -GCCGGacaUGCGCGgcUGGgCCCACC- -5'
19241 5' -62.3 NC_004684.1 + 10127 0.74 0.144324
Target:  5'- aGGCCgagcUGUGCGgGCCGacggugccgcccGCCCaGGUGGg -3'
miRNA:   3'- gCCGG----ACAUGCgCGGC------------UGGGcCCACC- -5'
19241 5' -62.3 NC_004684.1 + 39146 0.73 0.151901
Target:  5'- uGGCCggGUccacCGCGCUGuGCuCCGGGUGGg -3'
miRNA:   3'- gCCGGa-CAu---GCGCGGC-UG-GGCCCACC- -5'
19241 5' -62.3 NC_004684.1 + 25196 0.73 0.155823
Target:  5'- uGGCC---AgGCGCUGGCaCCGGGUGGc -3'
miRNA:   3'- gCCGGacaUgCGCGGCUG-GGCCCACC- -5'
19241 5' -62.3 NC_004684.1 + 12982 0.73 0.166453
Target:  5'- aGGCaacaccgaGCGCCGGgCCGGGUGGa -3'
miRNA:   3'- gCCGgacaug--CGCGGCUgGGCCCACC- -5'
19241 5' -62.3 NC_004684.1 + 622 0.72 0.185928
Target:  5'- gCGGCgaGUAcCGCGCCGaggucGCCgGGGUGc -3'
miRNA:   3'- -GCCGgaCAU-GCGCGGC-----UGGgCCCACc -5'
19241 5' -62.3 NC_004684.1 + 10015 0.72 0.195429
Target:  5'- cCGGaCCUGccGCGCGCCGACC-GGGa-- -3'
miRNA:   3'- -GCC-GGACa-UGCGCGGCUGGgCCCacc -5'
19241 5' -62.3 NC_004684.1 + 28085 0.72 0.195429
Target:  5'- gGGCCgccGCGCGaCCcGCaCCGGGUGGu -3'
miRNA:   3'- gCCGGacaUGCGC-GGcUG-GGCCCACC- -5'
19241 5' -62.3 NC_004684.1 + 32732 0.72 0.195429
Target:  5'- aCGGCCUacaucgaccgGUACGUcgcgGCCGACCU-GGUGGc -3'
miRNA:   3'- -GCCGGA----------CAUGCG----CGGCUGGGcCCACC- -5'
19241 5' -62.3 NC_004684.1 + 31762 0.71 0.215705
Target:  5'- uCGGCCUGUACGCcaucgaccCCGAgaCCGGGaacaUGGc -3'
miRNA:   3'- -GCCGGACAUGCGc-------GGCUg-GGCCC----ACC- -5'
19241 5' -62.3 NC_004684.1 + 14221 0.71 0.219433
Target:  5'- uCGGCCUGUccccggaggccuucACGC-CgGACCC-GGUGGa -3'
miRNA:   3'- -GCCGGACA--------------UGCGcGgCUGGGcCCACC- -5'
19241 5' -62.3 NC_004684.1 + 66015 0.71 0.221048
Target:  5'- gCGGCC--UugGCGUCGGCCaGGGUGu -3'
miRNA:   3'- -GCCGGacAugCGCGGCUGGgCCCACc -5'
19241 5' -62.3 NC_004684.1 + 6195 0.71 0.223216
Target:  5'- aCGGCCaggUGUACGcCgaggccaccaaccccGCCGACcuggCCGGGUGGc -3'
miRNA:   3'- -GCCGG---ACAUGC-G---------------CGGCUG----GGCCCACC- -5'
19241 5' -62.3 NC_004684.1 + 51565 0.71 0.23095
Target:  5'- uGcGCCaGUGCGCGCUGcgcggcggcgaCCGGGUGGu -3'
miRNA:   3'- gC-CGGaCAUGCGCGGCug---------GGCCCACC- -5'
19241 5' -62.3 NC_004684.1 + 31850 0.71 0.232073
Target:  5'- gGGCCUGUAUGagaCGCCGugcgagcuGCCCGccgacgugcuGGUGGa -3'
miRNA:   3'- gCCGGACAUGC---GCGGC--------UGGGC----------CCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.