miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19241 5' -62.3 NC_004684.1 + 622 0.72 0.185928
Target:  5'- gCGGCgaGUAcCGCGCCGaggucGCCgGGGUGc -3'
miRNA:   3'- -GCCGgaCAU-GCGCGGC-----UGGgCCCACc -5'
19241 5' -62.3 NC_004684.1 + 1281 0.66 0.455037
Target:  5'- uGGCCauguuccgGUACGCGCgCGACgCGuGGccGGa -3'
miRNA:   3'- gCCGGa-------CAUGCGCG-GCUGgGC-CCa-CC- -5'
19241 5' -62.3 NC_004684.1 + 1473 0.69 0.280854
Target:  5'- gGGCCggacGUGCccgguGCGgCGGCCCuGGUGGc -3'
miRNA:   3'- gCCGGa---CAUG-----CGCgGCUGGGcCCACC- -5'
19241 5' -62.3 NC_004684.1 + 1979 0.69 0.308153
Target:  5'- aGcGCCUGgcGCGCGaaCCGcguucuggcagcGCCUGGGUGGg -3'
miRNA:   3'- gC-CGGACa-UGCGC--GGC------------UGGGCCCACC- -5'
19241 5' -62.3 NC_004684.1 + 2733 0.66 0.464266
Target:  5'- gGuGCCgcUGCGCGCCGACaUCGcGGUGc -3'
miRNA:   3'- gC-CGGacAUGCGCGGCUG-GGC-CCACc -5'
19241 5' -62.3 NC_004684.1 + 2955 0.68 0.345062
Target:  5'- aGGCCaucgGCGCGCUGcuguUgCGGGUGGc -3'
miRNA:   3'- gCCGGaca-UGCGCGGCu---GgGCCCACC- -5'
19241 5' -62.3 NC_004684.1 + 3630 0.7 0.25551
Target:  5'- uGGCCgaaGCGCGCC-ACCUGGGUc- -3'
miRNA:   3'- gCCGGacaUGCGCGGcUGGGCCCAcc -5'
19241 5' -62.3 NC_004684.1 + 4049 0.67 0.376803
Target:  5'- uGGCCUaccgGCcauCGCCGGgugaCCGGGUGGu -3'
miRNA:   3'- gCCGGAca--UGc--GCGGCUg---GGCCCACC- -5'
19241 5' -62.3 NC_004684.1 + 5925 0.68 0.360689
Target:  5'- cCGG-CUGgcCGCGCUGGCcaCCGGGcGGu -3'
miRNA:   3'- -GCCgGACauGCGCGGCUG--GGCCCaCC- -5'
19241 5' -62.3 NC_004684.1 + 6195 0.71 0.223216
Target:  5'- aCGGCCaggUGUACGcCgaggccaccaaccccGCCGACcuggCCGGGUGGc -3'
miRNA:   3'- -GCCGG---ACAUGC-G---------------CGGCUG----GGCCCACC- -5'
19241 5' -62.3 NC_004684.1 + 6285 0.67 0.401866
Target:  5'- gCGGCgaaCUGUAgcCGCGUCGACC--GGUGGc -3'
miRNA:   3'- -GCCG---GACAU--GCGCGGCUGGgcCCACC- -5'
19241 5' -62.3 NC_004684.1 + 6798 0.69 0.294256
Target:  5'- cCGGCCU--GCGCaCCGugCgCGGcGUGGa -3'
miRNA:   3'- -GCCGGAcaUGCGcGGCugG-GCC-CACC- -5'
19241 5' -62.3 NC_004684.1 + 6838 0.69 0.308153
Target:  5'- uGGCCUacgGCGCGaagggCGACgCCGuGGUGGu -3'
miRNA:   3'- gCCGGAca-UGCGCg----GCUG-GGC-CCACC- -5'
19241 5' -62.3 NC_004684.1 + 7352 0.67 0.419153
Target:  5'- -cGCCgGUGCGCGCCGuggagaacgcAUCCGagcugugcuGGUGGa -3'
miRNA:   3'- gcCGGaCAUGCGCGGC----------UGGGC---------CCACC- -5'
19241 5' -62.3 NC_004684.1 + 7492 0.75 0.111391
Target:  5'- gGGCCgguucGUGCGcCGCCGcAUCgGGGUGGa -3'
miRNA:   3'- gCCGGa----CAUGC-GCGGC-UGGgCCCACC- -5'
19241 5' -62.3 NC_004684.1 + 7583 0.7 0.274336
Target:  5'- gCGGCUgGUGCGCGgCaACCC-GGUGGu -3'
miRNA:   3'- -GCCGGaCAUGCGCgGcUGGGcCCACC- -5'
19241 5' -62.3 NC_004684.1 + 8527 0.68 0.329926
Target:  5'- uGGCgugCUGUGCGgGCCGGa-CGaGGUGGa -3'
miRNA:   3'- gCCG---GACAUGCgCGGCUggGC-CCACC- -5'
19241 5' -62.3 NC_004684.1 + 9007 0.66 0.455037
Target:  5'- aGGCCUccACGCGCgGugCCGuGcGGg -3'
miRNA:   3'- gCCGGAcaUGCGCGgCugGGCcCaCC- -5'
19241 5' -62.3 NC_004684.1 + 9061 0.68 0.337432
Target:  5'- gGGCCaccggGCGCGCCauGACCCGGcGUc- -3'
miRNA:   3'- gCCGGaca--UGCGCGG--CUGGGCC-CAcc -5'
19241 5' -62.3 NC_004684.1 + 9202 0.68 0.352814
Target:  5'- gGGCgCaGUGgGCGCgUGA-CCGGGUGGg -3'
miRNA:   3'- gCCG-GaCAUgCGCG-GCUgGGCCCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.