miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19241 5' -62.3 NC_004684.1 + 6838 0.69 0.308153
Target:  5'- uGGCCUacgGCGCGaagggCGACgCCGuGGUGGu -3'
miRNA:   3'- gCCGGAca-UGCGCg----GCUG-GGC-CCACC- -5'
19241 5' -62.3 NC_004684.1 + 48751 0.7 0.243557
Target:  5'- aGGCCaUGUccaGCGCcacgcuggacuuGCCGACgCCGGGcGGg -3'
miRNA:   3'- gCCGG-ACA---UGCG------------CGGCUG-GGCCCaCC- -5'
19241 5' -62.3 NC_004684.1 + 15528 0.7 0.249475
Target:  5'- gGGCgCUGgAgGCGCUGAUCCGcguuGGUGGa -3'
miRNA:   3'- gCCG-GACaUgCGCGGCUGGGC----CCACC- -5'
19241 5' -62.3 NC_004684.1 + 38039 0.7 0.25551
Target:  5'- aCGcCCUGUACGCGCCGAccaccCCCGaGGc-- -3'
miRNA:   3'- -GCcGGACAUGCGCGGCU-----GGGC-CCacc -5'
19241 5' -62.3 NC_004684.1 + 3630 0.7 0.25551
Target:  5'- uGGCCgaaGCGCGCC-ACCUGGGUc- -3'
miRNA:   3'- gCCGGacaUGCGCGGcUGGGCCCAcc -5'
19241 5' -62.3 NC_004684.1 + 7583 0.7 0.274336
Target:  5'- gCGGCUgGUGCGCGgCaACCC-GGUGGu -3'
miRNA:   3'- -GCCGGaCAUGCGCgGcUGGGcCCACC- -5'
19241 5' -62.3 NC_004684.1 + 33874 0.7 0.274336
Target:  5'- uCGGCCUaccaggcgGUGCGgGCgGugCC-GGUGGg -3'
miRNA:   3'- -GCCGGA--------CAUGCgCGgCugGGcCCACC- -5'
19241 5' -62.3 NC_004684.1 + 54288 0.69 0.280854
Target:  5'- cCGGCCggggGUGCGCGCauCGGCCCccuuGGcGGc -3'
miRNA:   3'- -GCCGGa---CAUGCGCG--GCUGGGc---CCaCC- -5'
19241 5' -62.3 NC_004684.1 + 27703 0.69 0.287494
Target:  5'- gCGGCCUGguggaaaGCGaauaCGGCCCGGGc-- -3'
miRNA:   3'- -GCCGGACaug----CGCg---GCUGGGCCCacc -5'
19241 5' -62.3 NC_004684.1 + 31850 0.71 0.232073
Target:  5'- gGGCCUGUAUGagaCGCCGugcgagcuGCCCGccgacgugcuGGUGGa -3'
miRNA:   3'- gCCGGACAUGC---GCGGC--------UGGGC----------CCACC- -5'
19241 5' -62.3 NC_004684.1 + 51565 0.71 0.23095
Target:  5'- uGcGCCaGUGCGCGCUGcgcggcggcgaCCGGGUGGu -3'
miRNA:   3'- gC-CGGaCAUGCGCGGCug---------GGCCCACC- -5'
19241 5' -62.3 NC_004684.1 + 66015 0.71 0.221048
Target:  5'- gCGGCC--UugGCGUCGGCCaGGGUGu -3'
miRNA:   3'- -GCCGGacAugCGCGGCUGGgCCCACc -5'
19241 5' -62.3 NC_004684.1 + 63924 0.8 0.054302
Target:  5'- aCGGCgUUGUACGCGCCGAaCUGGGUGc -3'
miRNA:   3'- -GCCG-GACAUGCGCGGCUgGGCCCACc -5'
19241 5' -62.3 NC_004684.1 + 44415 0.76 0.108514
Target:  5'- aCGGCCaccucGUugGCGuCCGGCCC-GGUGGc -3'
miRNA:   3'- -GCCGGa----CAugCGC-GGCUGGGcCCACC- -5'
19241 5' -62.3 NC_004684.1 + 25196 0.73 0.155823
Target:  5'- uGGCC---AgGCGCUGGCaCCGGGUGGc -3'
miRNA:   3'- gCCGGacaUgCGCGGCUG-GGCCCACC- -5'
19241 5' -62.3 NC_004684.1 + 12982 0.73 0.166453
Target:  5'- aGGCaacaccgaGCGCCGGgCCGGGUGGa -3'
miRNA:   3'- gCCGgacaug--CGCGGCUgGGCCCACC- -5'
19241 5' -62.3 NC_004684.1 + 10015 0.72 0.195429
Target:  5'- cCGGaCCUGccGCGCGCCGACC-GGGa-- -3'
miRNA:   3'- -GCC-GGACa-UGCGCGGCUGGgCCCacc -5'
19241 5' -62.3 NC_004684.1 + 28085 0.72 0.195429
Target:  5'- gGGCCgccGCGCGaCCcGCaCCGGGUGGu -3'
miRNA:   3'- gCCGGacaUGCGC-GGcUG-GGCCCACC- -5'
19241 5' -62.3 NC_004684.1 + 32732 0.72 0.195429
Target:  5'- aCGGCCUacaucgaccgGUACGUcgcgGCCGACCU-GGUGGc -3'
miRNA:   3'- -GCCGGA----------CAUGCG----CGGCUGGGcCCACC- -5'
19241 5' -62.3 NC_004684.1 + 31762 0.71 0.215705
Target:  5'- uCGGCCUGUACGCcaucgaccCCGAgaCCGGGaacaUGGc -3'
miRNA:   3'- -GCCGGACAUGCGc-------GGCUg-GGCCC----ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.