miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19243 3' -58.5 NC_004684.1 + 5150 0.66 0.593434
Target:  5'- gGGCAGGaccaGCCGCgCUaccccGAuguCGAGGUGg -3'
miRNA:   3'- aCCGUCCg---UGGUG-GAc----CUu--GCUCCAC- -5'
19243 3' -58.5 NC_004684.1 + 51036 0.66 0.593434
Target:  5'- cGGCAGGaugcgGCCACCgccGGuGACGAugcgcccgugGGUGa -3'
miRNA:   3'- aCCGUCCg----UGGUGGa--CC-UUGCU----------CCAC- -5'
19243 3' -58.5 NC_004684.1 + 36910 0.66 0.593434
Target:  5'- cUGGCcgguGGCAUCGCCcGGu-CGAGGc- -3'
miRNA:   3'- -ACCGu---CCGUGGUGGaCCuuGCUCCac -5'
19243 3' -58.5 NC_004684.1 + 23165 0.66 0.587044
Target:  5'- gGaGCAGGUGCCcgaaauguuccggcCCUGGGucgacaaguaccGCGAGGUGc -3'
miRNA:   3'- aC-CGUCCGUGGu-------------GGACCU------------UGCUCCAC- -5'
19243 3' -58.5 NC_004684.1 + 42410 0.66 0.582791
Target:  5'- gGGCAGGaUGCCGcCCUGGGACaccGGa- -3'
miRNA:   3'- aCCGUCC-GUGGU-GGACCUUGcu-CCac -5'
19243 3' -58.5 NC_004684.1 + 25567 0.66 0.582791
Target:  5'- cGGUggaaGGuGCGCUACCcGGAGCGcuccagauuGGGUGg -3'
miRNA:   3'- aCCG----UC-CGUGGUGGaCCUUGC---------UCCAC- -5'
19243 3' -58.5 NC_004684.1 + 9979 0.66 0.579605
Target:  5'- cGGCAcaccGGUcgagugauacgcugGCCGCCUGGAuaGCGAcuGGUa -3'
miRNA:   3'- aCCGU----CCG--------------UGGUGGACCU--UGCU--CCAc -5'
19243 3' -58.5 NC_004684.1 + 53127 0.66 0.572187
Target:  5'- gGGUAGGUGCCGCC-GGAaaugACcGGGUc -3'
miRNA:   3'- aCCGUCCGUGGUGGaCCU----UGcUCCAc -5'
19243 3' -58.5 NC_004684.1 + 7984 0.66 0.572187
Target:  5'- cGGCAGGaggaCGCCUGGAaggccuACGAcgcGGUa -3'
miRNA:   3'- aCCGUCCgug-GUGGACCU------UGCU---CCAc -5'
19243 3' -58.5 NC_004684.1 + 20524 0.66 0.56163
Target:  5'- aGGCGGcGuCAUCGCCUGGGugGgccAGGc- -3'
miRNA:   3'- aCCGUC-C-GUGGUGGACCUugC---UCCac -5'
19243 3' -58.5 NC_004684.1 + 29666 0.66 0.551126
Target:  5'- cGaGCAGGCGcuCCACCUcgccGGGCGcaAGGUGg -3'
miRNA:   3'- aC-CGUCCGU--GGUGGAc---CUUGC--UCCAC- -5'
19243 3' -58.5 NC_004684.1 + 13357 0.66 0.551126
Target:  5'- cGGCGGGCAcacCCGCCacGAAggcCGAGGa- -3'
miRNA:   3'- aCCGUCCGU---GGUGGacCUU---GCUCCac -5'
19243 3' -58.5 NC_004684.1 + 53619 0.67 0.540683
Target:  5'- gGcGCAGGUuggUCGCCUGGAGCGccAGGc- -3'
miRNA:   3'- aC-CGUCCGu--GGUGGACCUUGC--UCCac -5'
19243 3' -58.5 NC_004684.1 + 44567 0.67 0.540683
Target:  5'- cGGCcuGCACCGCCgGGAACugccGGUc -3'
miRNA:   3'- aCCGucCGUGGUGGaCCUUGcu--CCAc -5'
19243 3' -58.5 NC_004684.1 + 9566 0.67 0.530307
Target:  5'- cGGCGGccaGCACCGCC-GGGACcAGGc- -3'
miRNA:   3'- aCCGUC---CGUGGUGGaCCUUGcUCCac -5'
19243 3' -58.5 NC_004684.1 + 55011 0.67 0.530307
Target:  5'- cGGCAaacGGCACCAgg-GGAGcCGaAGGUGg -3'
miRNA:   3'- aCCGU---CCGUGGUggaCCUU-GC-UCCAC- -5'
19243 3' -58.5 NC_004684.1 + 12762 0.67 0.520006
Target:  5'- uUGGCccgcgcGGCugCGCCUGcGGccaACGAGGa- -3'
miRNA:   3'- -ACCGu-----CCGugGUGGAC-CU---UGCUCCac -5'
19243 3' -58.5 NC_004684.1 + 3201 0.67 0.509783
Target:  5'- cGGCAcaccGGCAacgccgacgugCGCCUGGAA-GAGGUGc -3'
miRNA:   3'- aCCGU----CCGUg----------GUGGACCUUgCUCCAC- -5'
19243 3' -58.5 NC_004684.1 + 37659 0.67 0.499645
Target:  5'- cGGuCAGGCAUCgACCcGGuGCGccAGGUGg -3'
miRNA:   3'- aCC-GUCCGUGG-UGGaCCuUGC--UCCAC- -5'
19243 3' -58.5 NC_004684.1 + 13984 0.67 0.498637
Target:  5'- gGcGCAGGCcagcccgGCCACCUGGAcACGGugcaGUGg -3'
miRNA:   3'- aC-CGUCCG-------UGGUGGACCU-UGCUc---CAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.