Results 1 - 20 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19243 | 5' | -59.1 | NC_004684.1 | + | 41874 | 0.66 | 0.584465 |
Target: 5'- gGUACUGGACgCaGGcccGCGACaugaacgCGCUGGc -3' miRNA: 3'- aCGUGACCUG-GaCCu--CGCUG-------GCGACC- -5' |
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19243 | 5' | -59.1 | NC_004684.1 | + | 27810 | 0.66 | 0.575033 |
Target: 5'- gGUcCUGGccugcuCCUGGugGGCGACUccuGCUGGg -3' miRNA: 3'- aCGuGACCu-----GGACC--UCGCUGG---CGACC- -5' |
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19243 | 5' | -59.1 | NC_004684.1 | + | 19483 | 0.66 | 0.575033 |
Target: 5'- aUGCGCc---CCUGGAGCcaGCCGCUGc -3' miRNA: 3'- -ACGUGaccuGGACCUCGc-UGGCGACc -5' |
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19243 | 5' | -59.1 | NC_004684.1 | + | 5934 | 0.66 | 0.579221 |
Target: 5'- cGCGCUGGccaccgggcgguccaACCUGGccgcgccggugAGCGACCGg--- -3' miRNA: 3'- aCGUGACC---------------UGGACC-----------UCGCUGGCgacc -5' |
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19243 | 5' | -59.1 | NC_004684.1 | + | 13562 | 0.66 | 0.585515 |
Target: 5'- uUGCACUccaGCCUGGaAGCGcacgcCCGCaUGGa -3' miRNA: 3'- -ACGUGAcc-UGGACC-UCGCu----GGCG-ACC- -5' |
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19243 | 5' | -59.1 | NC_004684.1 | + | 23257 | 0.66 | 0.558355 |
Target: 5'- aGCGcCUGGugCUcaacgacgcgggcgaGGAGCGcguggucgGCaCGCUGGa -3' miRNA: 3'- aCGU-GACCugGA---------------CCUCGC--------UG-GCGACC- -5' |
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19243 | 5' | -59.1 | NC_004684.1 | + | 6073 | 0.66 | 0.543874 |
Target: 5'- cGCGCUGGuagccgauGCCgGGGGCGGCCu---- -3' miRNA: 3'- aCGUGACC--------UGGaCCUCGCUGGcgacc -5' |
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19243 | 5' | -59.1 | NC_004684.1 | + | 19736 | 0.66 | 0.543874 |
Target: 5'- aGCGC-GGcACCUGGAGCGugCaGUa-- -3' miRNA: 3'- aCGUGaCC-UGGACCUCGCugG-CGacc -5' |
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19243 | 5' | -59.1 | NC_004684.1 | + | 24486 | 0.66 | 0.543874 |
Target: 5'- cGCGCUaccGCCgGGGGCGguGCCGCaGGg -3' miRNA: 3'- aCGUGAcc-UGGaCCUCGC--UGGCGaCC- -5' |
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19243 | 5' | -59.1 | NC_004684.1 | + | 58085 | 0.66 | 0.564594 |
Target: 5'- gUGCAgCUcGACCgGGAGCGcGCCGagcaUGGc -3' miRNA: 3'- -ACGU-GAcCUGGaCCUCGC-UGGCg---ACC- -5' |
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19243 | 5' | -59.1 | NC_004684.1 | + | 21761 | 0.66 | 0.585515 |
Target: 5'- cGCGCUGcGCCUGuuccccggcaaGAcCGACgCGCUGGu -3' miRNA: 3'- aCGUGACcUGGAC-----------CUcGCUG-GCGACC- -5' |
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19243 | 5' | -59.1 | NC_004684.1 | + | 7834 | 0.66 | 0.554206 |
Target: 5'- aUGCGCUGGugCgacaacGGCG-CgCGCUGGc -3' miRNA: 3'- -ACGUGACCugGacc---UCGCuG-GCGACC- -5' |
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19243 | 5' | -59.1 | NC_004684.1 | + | 4433 | 0.66 | 0.585515 |
Target: 5'- cGCGC-GGGCCUGcuGGCG-CaGCUGGa -3' miRNA: 3'- aCGUGaCCUGGACc-UCGCuGgCGACC- -5' |
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19243 | 5' | -59.1 | NC_004684.1 | + | 44730 | 0.66 | 0.563553 |
Target: 5'- cGCuuCUGcGGCCuucuccaggucuuUGGGGUcGCCGCUGGc -3' miRNA: 3'- aCGu-GAC-CUGG-------------ACCUCGcUGGCGACC- -5' |
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19243 | 5' | -59.1 | NC_004684.1 | + | 35994 | 0.66 | 0.554206 |
Target: 5'- gGCGCguuGGCCUGGuuGGCGAgCGUgaUGGu -3' miRNA: 3'- aCGUGac-CUGGACC--UCGCUgGCG--ACC- -5' |
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19243 | 5' | -59.1 | NC_004684.1 | + | 2847 | 0.67 | 0.480488 |
Target: 5'- aGCAcCUGGACCacgGGuuccuggucgcgccGGaCGACCuGCUGGu -3' miRNA: 3'- aCGU-GACCUGGa--CC--------------UC-GCUGG-CGACC- -5' |
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19243 | 5' | -59.1 | NC_004684.1 | + | 51178 | 0.67 | 0.493292 |
Target: 5'- aUGCGCcGGGCCaUGGAccGCGcGCC-CUGGc -3' miRNA: 3'- -ACGUGaCCUGG-ACCU--CGC-UGGcGACC- -5' |
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19243 | 5' | -59.1 | NC_004684.1 | + | 43720 | 0.67 | 0.503246 |
Target: 5'- aUGCGCUGGuauGCCUGGAcauaGCGcagcGCCucgGCUGa -3' miRNA: 3'- -ACGUGACC---UGGACCU----CGC----UGG---CGACc -5' |
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19243 | 5' | -59.1 | NC_004684.1 | + | 52735 | 0.67 | 0.503246 |
Target: 5'- gGCGCUGuccuCCaGGucgucGUGGCCGCUGGc -3' miRNA: 3'- aCGUGACcu--GGaCCu----CGCUGGCGACC- -5' |
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19243 | 5' | -59.1 | NC_004684.1 | + | 29433 | 0.67 | 0.512279 |
Target: 5'- gUGCGCccGGACCcgcUGG-GCGACCGguucgacaucgacCUGGu -3' miRNA: 3'- -ACGUGa-CCUGG---ACCuCGCUGGC-------------GACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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