miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19243 5' -59.1 NC_004684.1 + 17262 0.68 0.426402
Target:  5'- gGCGCUGGuCCUGcaacugcucGGCGGC-GCUGGu -3'
miRNA:   3'- aCGUGACCuGGACc--------UCGCUGgCGACC- -5'
19243 5' -59.1 NC_004684.1 + 41953 0.69 0.382058
Target:  5'- gGCACcaacGGCCUGGAG-GACCGCa-- -3'
miRNA:   3'- aCGUGac--CUGGACCUCgCUGGCGacc -5'
19243 5' -59.1 NC_004684.1 + 40339 0.69 0.382058
Target:  5'- gGCGCUGGGCaggucgCUGGcGGCGGCC-UUGGc -3'
miRNA:   3'- aCGUGACCUG------GACC-UCGCUGGcGACC- -5'
19243 5' -59.1 NC_004684.1 + 15332 0.69 0.385491
Target:  5'- aGCACUGGACCauacgcacaaccgguUugucgccaucgcGGAGCG-CgCGCUGGu -3'
miRNA:   3'- aCGUGACCUGG---------------A------------CCUCGCuG-GCGACC- -5'
19243 5' -59.1 NC_004684.1 + 7553 0.69 0.399425
Target:  5'- gGUGCUGGACCggccccGGGUGGC-GCUGGu -3'
miRNA:   3'- aCGUGACCUGGac----CUCGCUGgCGACC- -5'
19243 5' -59.1 NC_004684.1 + 23757 0.69 0.399425
Target:  5'- gUGCGCaguucGGGCCgUGGGGCGcGgCGUUGGg -3'
miRNA:   3'- -ACGUGa----CCUGG-ACCUCGC-UgGCGACC- -5'
19243 5' -59.1 NC_004684.1 + 55651 0.69 0.399425
Target:  5'- cGUGCguggaggaGGGCCUGGcGGCGcaccaGCUGCUGGa -3'
miRNA:   3'- aCGUGa-------CCUGGACC-UCGC-----UGGCGACC- -5'
19243 5' -59.1 NC_004684.1 + 10505 0.69 0.408296
Target:  5'- cGCACUGGGCCgccgacGGucAGCGcgcACCGCUc- -3'
miRNA:   3'- aCGUGACCUGGa-----CC--UCGC---UGGCGAcc -5'
19243 5' -59.1 NC_004684.1 + 33461 0.69 0.417289
Target:  5'- cGCugUGGucuGCCUcGGcGGCGGCUGCggUGGa -3'
miRNA:   3'- aCGugACC---UGGA-CC-UCGCUGGCG--ACC- -5'
19243 5' -59.1 NC_004684.1 + 57187 0.69 0.373565
Target:  5'- gGCGCaggcGGGCCUGGAagGCGGCgGCgcgaUGGu -3'
miRNA:   3'- aCGUGa---CCUGGACCU--CGCUGgCG----ACC- -5'
19243 5' -59.1 NC_004684.1 + 4318 0.7 0.356967
Target:  5'- gUGCACcGGGCgcaCUGGAGUGccuaugacacccACCGCUGa -3'
miRNA:   3'- -ACGUGaCCUG---GACCUCGC------------UGGCGACc -5'
19243 5' -59.1 NC_004684.1 + 56695 0.7 0.333056
Target:  5'- cGCagaaGCUGGGCCcgGGGGUGAa-GCUGGc -3'
miRNA:   3'- aCG----UGACCUGGa-CCUCGCUggCGACC- -5'
19243 5' -59.1 NC_004684.1 + 10118 0.81 0.060525
Target:  5'- aGCGCgUGGACCUGGAGaacGCCGCUGa -3'
miRNA:   3'- aCGUG-ACCUGGACCUCgc-UGGCGACc -5'
19243 5' -59.1 NC_004684.1 + 42194 0.73 0.213878
Target:  5'- aGCAgUGGGCCgUGGAGCugguggccgacguGGCCGCcGGu -3'
miRNA:   3'- aCGUgACCUGG-ACCUCG-------------CUGGCGaCC- -5'
19243 5' -59.1 NC_004684.1 + 28252 0.73 0.219936
Target:  5'- cGCGgUGGacccggccaGCCUGGuGCGcgagGCCGCUGGc -3'
miRNA:   3'- aCGUgACC---------UGGACCuCGC----UGGCGACC- -5'
19243 5' -59.1 NC_004684.1 + 17560 0.72 0.245647
Target:  5'- cGC-CUGGACgaGGuGCGcgcacuguaaggugcACCGCUGGa -3'
miRNA:   3'- aCGuGACCUGgaCCuCGC---------------UGGCGACC- -5'
19243 5' -59.1 NC_004684.1 + 21594 0.72 0.249341
Target:  5'- aUGCACgacuACCUGGAguucgaggGCGACCGcCUGGa -3'
miRNA:   3'- -ACGUGacc-UGGACCU--------CGCUGGC-GACC- -5'
19243 5' -59.1 NC_004684.1 + 3607 0.72 0.261983
Target:  5'- cGCACUGGGCCgccgaacacGAGUGGCCGaagcgcgccacCUGGg -3'
miRNA:   3'- aCGUGACCUGGac-------CUCGCUGGC-----------GACC- -5'
19243 5' -59.1 NC_004684.1 + 6873 0.72 0.268498
Target:  5'- cUGCACUGGcUCUGGGGCGAggUCGUcaaccUGGu -3'
miRNA:   3'- -ACGUGACCuGGACCUCGCU--GGCG-----ACC- -5'
19243 5' -59.1 NC_004684.1 + 8850 0.71 0.310341
Target:  5'- gGCcaUGGGCCUGGAcgugucgccugaGCGcCUGCUGGg -3'
miRNA:   3'- aCGugACCUGGACCU------------CGCuGGCGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.