miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19243 5' -59.1 NC_004684.1 + 1402 0.69 0.373565
Target:  5'- uUGCACUGGccagcgACCUGGAG-GcCUGCcGGg -3'
miRNA:   3'- -ACGUGACC------UGGACCUCgCuGGCGaCC- -5'
19243 5' -59.1 NC_004684.1 + 2847 0.67 0.480488
Target:  5'- aGCAcCUGGACCacgGGuuccuggucgcgccGGaCGACCuGCUGGu -3'
miRNA:   3'- aCGU-GACCUGGa--CC--------------UC-GCUGG-CGACC- -5'
19243 5' -59.1 NC_004684.1 + 3012 0.67 0.503247
Target:  5'- aUGCugauGCcGGACCacaUGGAGCuGACCGCg-- -3'
miRNA:   3'- -ACG----UGaCCUGG---ACCUCG-CUGGCGacc -5'
19243 5' -59.1 NC_004684.1 + 3496 0.67 0.523409
Target:  5'- gGUAcCUGGACCaccuGGC-ACCGCUGGg -3'
miRNA:   3'- aCGU-GACCUGGacc-UCGcUGGCGACC- -5'
19243 5' -59.1 NC_004684.1 + 3607 0.72 0.261983
Target:  5'- cGCACUGGGCCgccgaacacGAGUGGCCGaagcgcgccacCUGGg -3'
miRNA:   3'- aCGUGACCUGGac-------CUCGCUGGC-----------GACC- -5'
19243 5' -59.1 NC_004684.1 + 3752 0.67 0.483429
Target:  5'- cGUGCUGG-CgUGGGGCGACaCGaaagGGa -3'
miRNA:   3'- aCGUGACCuGgACCUCGCUG-GCga--CC- -5'
19243 5' -59.1 NC_004684.1 + 3821 0.67 0.51228
Target:  5'- cGCGCaggccgaUGGACCugaUGGcAGCGGCCGa-GGa -3'
miRNA:   3'- aCGUG-------ACCUGG---ACC-UCGCUGGCgaCC- -5'
19243 5' -59.1 NC_004684.1 + 4318 0.7 0.356967
Target:  5'- gUGCACcGGGCgcaCUGGAGUGccuaugacacccACCGCUGa -3'
miRNA:   3'- -ACGUGaCCUG---GACCUCGC------------UGGCGACc -5'
19243 5' -59.1 NC_004684.1 + 4433 0.66 0.585515
Target:  5'- cGCGC-GGGCCUGcuGGCG-CaGCUGGa -3'
miRNA:   3'- aCGUGaCCUGGACc-UCGCuGgCGACC- -5'
19243 5' -59.1 NC_004684.1 + 5618 0.7 0.325352
Target:  5'- cGCGCaUGGugCUGGAGCuGGaCGcCUGGu -3'
miRNA:   3'- aCGUG-ACCugGACCUCG-CUgGC-GACC- -5'
19243 5' -59.1 NC_004684.1 + 5934 0.66 0.579221
Target:  5'- cGCGCUGGccaccgggcgguccaACCUGGccgcgccggugAGCGACCGg--- -3'
miRNA:   3'- aCGUGACC---------------UGGACC-----------UCGCUGGCgacc -5'
19243 5' -59.1 NC_004684.1 + 6073 0.66 0.543874
Target:  5'- cGCGCUGGuagccgauGCCgGGGGCGGCCu---- -3'
miRNA:   3'- aCGUGACC--------UGGaCCUCGCUGGcgacc -5'
19243 5' -59.1 NC_004684.1 + 6873 0.72 0.268498
Target:  5'- cUGCACUGGcUCUGGGGCGAggUCGUcaaccUGGu -3'
miRNA:   3'- -ACGUGACCuGGACCUCGCU--GGCG-----ACC- -5'
19243 5' -59.1 NC_004684.1 + 7553 0.69 0.399425
Target:  5'- gGUGCUGGACCggccccGGGUGGC-GCUGGu -3'
miRNA:   3'- aCGUGACCUGGac----CUCGCUGgCGACC- -5'
19243 5' -59.1 NC_004684.1 + 7790 0.68 0.444976
Target:  5'- aGCAUUGGugCgcgGGAuGUGACCgGgUGGu -3'
miRNA:   3'- aCGUGACCugGa--CCU-CGCUGG-CgACC- -5'
19243 5' -59.1 NC_004684.1 + 7834 0.66 0.554206
Target:  5'- aUGCGCUGGugCgacaacGGCG-CgCGCUGGc -3'
miRNA:   3'- -ACGUGACCugGacc---UCGCuG-GCGACC- -5'
19243 5' -59.1 NC_004684.1 + 8850 0.71 0.310341
Target:  5'- gGCcaUGGGCCUGGAcgugucgccugaGCGcCUGCUGGg -3'
miRNA:   3'- aCGugACCUGGACCU------------CGCuGGCGACC- -5'
19243 5' -59.1 NC_004684.1 + 9467 0.67 0.513287
Target:  5'- gGCGCUGGAgCUGGcgggcaAGCGcaGCCGUa-- -3'
miRNA:   3'- aCGUGACCUgGACC------UCGC--UGGCGacc -5'
19243 5' -59.1 NC_004684.1 + 10118 0.81 0.060525
Target:  5'- aGCGCgUGGACCUGGAGaacGCCGCUGa -3'
miRNA:   3'- aCGUG-ACCUGGACCUCgc-UGGCGACc -5'
19243 5' -59.1 NC_004684.1 + 10505 0.69 0.408296
Target:  5'- cGCACUGGGCCgccgacGGucAGCGcgcACCGCUc- -3'
miRNA:   3'- aCGUGACCUGGa-----CC--UCGC---UGGCGAcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.