miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19245 3' -56.5 NC_004684.1 + 57588 1.08 0.001306
Target:  5'- cCGCAACCUACCGACGGUGGUGACCGUg -3'
miRNA:   3'- -GCGUUGGAUGGCUGCCACCACUGGCA- -5'
19245 3' -56.5 NC_004684.1 + 11351 0.79 0.134222
Target:  5'- gGCGGCCUccagGCCcACGGUGGUGGCCa- -3'
miRNA:   3'- gCGUUGGA----UGGcUGCCACCACUGGca -5'
19245 3' -56.5 NC_004684.1 + 57545 0.79 0.145502
Target:  5'- gGCAGCUcACCGGCGGcGGUGAUCGa -3'
miRNA:   3'- gCGUUGGaUGGCUGCCaCCACUGGCa -5'
19245 3' -56.5 NC_004684.1 + 23469 0.77 0.1997
Target:  5'- cCGaCAGCgUGaCGGCGGUGGUGACCGc -3'
miRNA:   3'- -GC-GUUGgAUgGCUGCCACCACUGGCa -5'
19245 3' -56.5 NC_004684.1 + 9895 0.75 0.250571
Target:  5'- gCGCAggcACCUGCgugcggcgcuuguCGACGGUGGgcagGACCGg -3'
miRNA:   3'- -GCGU---UGGAUG-------------GCUGCCACCa---CUGGCa -5'
19245 3' -56.5 NC_004684.1 + 14420 0.75 0.262077
Target:  5'- gCGCGAaCUGCUGGCcaaggggucaacgaGGUGGUGACCGa -3'
miRNA:   3'- -GCGUUgGAUGGCUG--------------CCACCACUGGCa -5'
19245 3' -56.5 NC_004684.1 + 4047 0.74 0.284283
Target:  5'- gGUGGCCUACCGGCcaucgccgGGUGACCGg -3'
miRNA:   3'- gCGUUGGAUGGCUGcca-----CCACUGGCa -5'
19245 3' -56.5 NC_004684.1 + 55753 0.73 0.344205
Target:  5'- gCGUGGCCgaUGCCGACGGUcaGGcGGCCGa -3'
miRNA:   3'- -GCGUUGG--AUGGCUGCCA--CCaCUGGCa -5'
19245 3' -56.5 NC_004684.1 + 30723 0.72 0.360538
Target:  5'- uCGCcGCCgu-CGAUGGUGGUGGCCu- -3'
miRNA:   3'- -GCGuUGGaugGCUGCCACCACUGGca -5'
19245 3' -56.5 NC_004684.1 + 35619 0.72 0.368905
Target:  5'- gCGCGGCaCUACUuuccGCGcGUGGUGGCCGa -3'
miRNA:   3'- -GCGUUG-GAUGGc---UGC-CACCACUGGCa -5'
19245 3' -56.5 NC_004684.1 + 35406 0.72 0.398331
Target:  5'- gGCGGCCUGCgGGuagaucagcgcggaGGUGGUGAUCGg -3'
miRNA:   3'- gCGUUGGAUGgCUg-------------CCACCACUGGCa -5'
19245 3' -56.5 NC_004684.1 + 59341 0.71 0.431081
Target:  5'- cCGCAcCCUGCUGGCGcUGGagGACCGc -3'
miRNA:   3'- -GCGUuGGAUGGCUGCcACCa-CUGGCa -5'
19245 3' -56.5 NC_004684.1 + 7633 0.71 0.449942
Target:  5'- aGcCAGCUcGCCGugGcgggcGUGGUGACCGg -3'
miRNA:   3'- gC-GUUGGaUGGCugC-----CACCACUGGCa -5'
19245 3' -56.5 NC_004684.1 + 54528 0.71 0.449942
Target:  5'- gGCGGCCU--CGGCGGUGGcGGCCu- -3'
miRNA:   3'- gCGUUGGAugGCUGCCACCaCUGGca -5'
19245 3' -56.5 NC_004684.1 + 3514 0.7 0.459542
Target:  5'- cCGCAAUC-GCCGACgGGUGGgccGACCu- -3'
miRNA:   3'- -GCGUUGGaUGGCUG-CCACCa--CUGGca -5'
19245 3' -56.5 NC_004684.1 + 62786 0.7 0.459542
Target:  5'- uGguGCCUGcCCGGCGG-GGUuGCCGg -3'
miRNA:   3'- gCguUGGAU-GGCUGCCaCCAcUGGCa -5'
19245 3' -56.5 NC_004684.1 + 49521 0.7 0.469249
Target:  5'- aGCGGCCcagcgugcacCCGGCGGUgugcgcGGUGGCCGa -3'
miRNA:   3'- gCGUUGGau--------GGCUGCCA------CCACUGGCa -5'
19245 3' -56.5 NC_004684.1 + 14931 0.7 0.479061
Target:  5'- gGCGGCCaUGCCGucgggcauccCGGUGGcGGCCGa -3'
miRNA:   3'- gCGUUGG-AUGGCu---------GCCACCaCUGGCa -5'
19245 3' -56.5 NC_004684.1 + 22183 0.7 0.479061
Target:  5'- cCGCAuggacGCgCUGCCGcuggagcgcggcGgGGUGGUGGCCGa -3'
miRNA:   3'- -GCGU-----UG-GAUGGC------------UgCCACCACUGGCa -5'
19245 3' -56.5 NC_004684.1 + 63116 0.7 0.479061
Target:  5'- aGCAccagGCCcuUGCUGGCgaugguGGUGGUGGCCGa -3'
miRNA:   3'- gCGU----UGG--AUGGCUG------CCACCACUGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.