miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19245 3' -56.5 NC_004684.1 + 40360 0.68 0.613683
Target:  5'- gGCGGCCUugGCCuugggggccucGGCGGUGGcGGCCu- -3'
miRNA:   3'- gCGUUGGA--UGG-----------CUGCCACCaCUGGca -5'
19245 3' -56.5 NC_004684.1 + 1636 0.69 0.539848
Target:  5'- gCGCAACCgggUACCGGCGcccaaGUGG-GGCCa- -3'
miRNA:   3'- -GCGUUGG---AUGGCUGC-----CACCaCUGGca -5'
19245 3' -56.5 NC_004684.1 + 64539 0.69 0.539848
Target:  5'- aGCGGCU---CGGCGGccuUGGUGACCGg -3'
miRNA:   3'- gCGUUGGaugGCUGCC---ACCACUGGCa -5'
19245 3' -56.5 NC_004684.1 + 41334 0.69 0.550249
Target:  5'- cCGCGACC-GCCGACGGccGGgccaaGGCCa- -3'
miRNA:   3'- -GCGUUGGaUGGCUGCCa-CCa----CUGGca -5'
19245 3' -56.5 NC_004684.1 + 41402 0.69 0.550249
Target:  5'- -uCGACCUACCGucGCGGUGGcGucccCCGUg -3'
miRNA:   3'- gcGUUGGAUGGC--UGCCACCaCu---GGCA- -5'
19245 3' -56.5 NC_004684.1 + 57139 0.69 0.571227
Target:  5'- gCGCGGCUgguucGCCuccauGGCGGcGGUGGCCGa -3'
miRNA:   3'- -GCGUUGGa----UGG-----CUGCCaCCACUGGCa -5'
19245 3' -56.5 NC_004684.1 + 53036 0.68 0.58179
Target:  5'- gGCGuacACCUGCgCGgugcccagcACGGUGGUGuCCGa -3'
miRNA:   3'- gCGU---UGGAUG-GC---------UGCCACCACuGGCa -5'
19245 3' -56.5 NC_004684.1 + 55395 0.68 0.601961
Target:  5'- gCGCcggaAACCUucgcugcGCUGGCGGUGGaGACCa- -3'
miRNA:   3'- -GCG----UUGGA-------UGGCUGCCACCaCUGGca -5'
19245 3' -56.5 NC_004684.1 + 29805 0.68 0.612616
Target:  5'- gGC-ACCUACCGGgacacccUGGUGGUG-CCa- -3'
miRNA:   3'- gCGuUGGAUGGCU-------GCCACCACuGGca -5'
19245 3' -56.5 NC_004684.1 + 56091 0.69 0.529514
Target:  5'- uGCGGCaUGCUGGCGGUggcGGUGGCaCGg -3'
miRNA:   3'- gCGUUGgAUGGCUGCCA---CCACUG-GCa -5'
19245 3' -56.5 NC_004684.1 + 48768 0.69 0.529514
Target:  5'- aCGCugGACUUGCCGACGccGGgcgGGCCGa -3'
miRNA:   3'- -GCG--UUGGAUGGCUGCcaCCa--CUGGCa -5'
19245 3' -56.5 NC_004684.1 + 8948 0.7 0.509073
Target:  5'- uGCAuauCCUGCCGcCGGUGGagaugcUGugCGa -3'
miRNA:   3'- gCGUu--GGAUGGCuGCCACC------ACugGCa -5'
19245 3' -56.5 NC_004684.1 + 23469 0.77 0.1997
Target:  5'- cCGaCAGCgUGaCGGCGGUGGUGACCGc -3'
miRNA:   3'- -GC-GUUGgAUgGCUGCCACCACUGGCa -5'
19245 3' -56.5 NC_004684.1 + 4047 0.74 0.284283
Target:  5'- gGUGGCCUACCGGCcaucgccgGGUGACCGg -3'
miRNA:   3'- gCGUUGGAUGGCUGcca-----CCACUGGCa -5'
19245 3' -56.5 NC_004684.1 + 35619 0.72 0.368905
Target:  5'- gCGCGGCaCUACUuuccGCGcGUGGUGGCCGa -3'
miRNA:   3'- -GCGUUG-GAUGGc---UGC-CACCACUGGCa -5'
19245 3' -56.5 NC_004684.1 + 62786 0.7 0.459542
Target:  5'- uGguGCCUGcCCGGCGG-GGUuGCCGg -3'
miRNA:   3'- gCguUGGAU-GGCUGCCaCCAcUGGCa -5'
19245 3' -56.5 NC_004684.1 + 3514 0.7 0.459542
Target:  5'- cCGCAAUC-GCCGACgGGUGGgccGACCu- -3'
miRNA:   3'- -GCGUUGGaUGGCUG-CCACCa--CUGGca -5'
19245 3' -56.5 NC_004684.1 + 49521 0.7 0.469249
Target:  5'- aGCGGCCcagcgugcacCCGGCGGUgugcgcGGUGGCCGa -3'
miRNA:   3'- gCGUUGGau--------GGCUGCCA------CCACUGGCa -5'
19245 3' -56.5 NC_004684.1 + 57820 0.7 0.488972
Target:  5'- -aCGGCCUGgucCCGGCGGUGcUGGCCGc -3'
miRNA:   3'- gcGUUGGAU---GGCUGCCACcACUGGCa -5'
19245 3' -56.5 NC_004684.1 + 9894 0.7 0.497973
Target:  5'- aGCAGgCcGCCGACGaGUGGUccgggcuGACCGa -3'
miRNA:   3'- gCGUUgGaUGGCUGC-CACCA-------CUGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.