miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19245 3' -56.5 NC_004684.1 + 1636 0.69 0.539848
Target:  5'- gCGCAACCgggUACCGGCGcccaaGUGG-GGCCa- -3'
miRNA:   3'- -GCGUUGG---AUGGCUGC-----CACCaCUGGca -5'
19245 3' -56.5 NC_004684.1 + 1909 0.68 0.612616
Target:  5'- cCGCAccugccggacccgGCCUGCCGGgccUGGUaccggcgcacGGUGGCCGc -3'
miRNA:   3'- -GCGU-------------UGGAUGGCU---GCCA----------CCACUGGCa -5'
19245 3' -56.5 NC_004684.1 + 2064 0.66 0.698725
Target:  5'- uCGUGGCCUGCCuGGCGcuggccGUGGUGcacagcgaggccGCCGUc -3'
miRNA:   3'- -GCGUUGGAUGG-CUGC------CACCAC------------UGGCA- -5'
19245 3' -56.5 NC_004684.1 + 3514 0.7 0.459542
Target:  5'- cCGCAAUC-GCCGACgGGUGGgccGACCu- -3'
miRNA:   3'- -GCGUUGGaUGGCUG-CCACCa--CUGGca -5'
19245 3' -56.5 NC_004684.1 + 4047 0.74 0.284283
Target:  5'- gGUGGCCUACCGGCcaucgccgGGUGACCGg -3'
miRNA:   3'- gCGUUGGAUGGCUGcca-----CCACUGGCa -5'
19245 3' -56.5 NC_004684.1 + 4173 0.69 0.537776
Target:  5'- gGCAACgaGCCGcCGGUGGccgagaagauggGGCCGUu -3'
miRNA:   3'- gCGUUGgaUGGCuGCCACCa-----------CUGGCA- -5'
19245 3' -56.5 NC_004684.1 + 4432 0.66 0.719575
Target:  5'- aCGCGcggGCCUGCUGGCGcagcUGGaGGCCGc -3'
miRNA:   3'- -GCGU---UGGAUGGCUGCc---ACCaCUGGCa -5'
19245 3' -56.5 NC_004684.1 + 5323 0.66 0.740099
Target:  5'- gGCGACCgUGCagcaGugGGUGGcggugGGCUGa -3'
miRNA:   3'- gCGUUGG-AUGg---CugCCACCa----CUGGCa -5'
19245 3' -56.5 NC_004684.1 + 5587 0.67 0.677631
Target:  5'- gGCGacccGCCUGCCGACGG----GGCCGa -3'
miRNA:   3'- gCGU----UGGAUGGCUGCCaccaCUGGCa -5'
19245 3' -56.5 NC_004684.1 + 5656 0.67 0.687148
Target:  5'- gGCGgauuccuGCCUcaGCCGugguCGGaGGUGGCCGg -3'
miRNA:   3'- gCGU-------UGGA--UGGCu---GCCaCCACUGGCa -5'
19245 3' -56.5 NC_004684.1 + 6080 0.66 0.750212
Target:  5'- gGCGGCggcCCGGCGGcGGUGcuGCCGg -3'
miRNA:   3'- gCGUUGgauGGCUGCCaCCAC--UGGCa -5'
19245 3' -56.5 NC_004684.1 + 6225 0.68 0.624355
Target:  5'- cCGcCGACCUgGCCG--GGUGGcUGACCGa -3'
miRNA:   3'- -GC-GUUGGA-UGGCugCCACC-ACUGGCa -5'
19245 3' -56.5 NC_004684.1 + 7122 0.67 0.688203
Target:  5'- aCGCAACCgccaccGCCGA-GGUacacccggaaGGUGGCCa- -3'
miRNA:   3'- -GCGUUGGa-----UGGCUgCCA----------CCACUGGca -5'
19245 3' -56.5 NC_004684.1 + 7594 0.67 0.667018
Target:  5'- aGCGACaUGCUGGCGGUGuucgccuccUGGCCGg -3'
miRNA:   3'- gCGUUGgAUGGCUGCCACc--------ACUGGCa -5'
19245 3' -56.5 NC_004684.1 + 7633 0.71 0.449942
Target:  5'- aGcCAGCUcGCCGugGcgggcGUGGUGACCGg -3'
miRNA:   3'- gC-GUUGGaUGGCugC-----CACCACUGGCa -5'
19245 3' -56.5 NC_004684.1 + 8948 0.7 0.509073
Target:  5'- uGCAuauCCUGCCGcCGGUGGagaugcUGugCGa -3'
miRNA:   3'- gCGUu--GGAUGGCuGCCACC------ACugGCa -5'
19245 3' -56.5 NC_004684.1 + 9894 0.7 0.497973
Target:  5'- aGCAGgCcGCCGACGaGUGGUccgggcuGACCGa -3'
miRNA:   3'- gCGUUgGaUGGCUGC-CACCA-------CUGGCa -5'
19245 3' -56.5 NC_004684.1 + 9895 0.75 0.250571
Target:  5'- gCGCAggcACCUGCgugcggcgcuuguCGACGGUGGgcagGACCGg -3'
miRNA:   3'- -GCGU---UGGAUG-------------GCUGCCACCa---CUGGCa -5'
19245 3' -56.5 NC_004684.1 + 10877 0.7 0.498977
Target:  5'- -uCGACCUcACCGACGccGGUGACCa- -3'
miRNA:   3'- gcGUUGGA-UGGCUGCcaCCACUGGca -5'
19245 3' -56.5 NC_004684.1 + 11351 0.79 0.134222
Target:  5'- gGCGGCCUccagGCCcACGGUGGUGGCCa- -3'
miRNA:   3'- gCGUUGGA----UGGcUGCCACCACUGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.