miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19246 3' -62.1 NC_004684.1 + 33835 0.7 0.215081
Target:  5'- uGCCCgGCGGCGGcGgcaacggGGCCAaccaaggaucguUCGGCCu -3'
miRNA:   3'- -UGGGgUGUCGUC-Ca------CCGGU------------AGCCGGu -5'
19246 3' -62.1 NC_004684.1 + 55764 0.7 0.215081
Target:  5'- -gCCgACGGuCAGGcGGCCGaCGGCCAg -3'
miRNA:   3'- ugGGgUGUC-GUCCaCCGGUaGCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 4168 0.7 0.22224
Target:  5'- cGCCCgGCAacgagccGCcGGUGGCCGagaagauggggccguUCGGCCGc -3'
miRNA:   3'- -UGGGgUGU-------CGuCCACCGGU---------------AGCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 62463 0.7 0.226179
Target:  5'- cGCUCC--GGgAGGUGGCCGUUGGCg- -3'
miRNA:   3'- -UGGGGugUCgUCCACCGGUAGCCGgu -5'
19246 3' -62.1 NC_004684.1 + 43892 0.69 0.237759
Target:  5'- cAUCgCugGGCAGGUGGaugaCA-CGGCCAu -3'
miRNA:   3'- -UGGgGugUCGUCCACCg---GUaGCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 28238 0.69 0.237759
Target:  5'- cACCCggagCACAGCGcGGUGGaCC--CGGCCAg -3'
miRNA:   3'- -UGGG----GUGUCGU-CCACC-GGuaGCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 28067 0.69 0.243733
Target:  5'- gGCCCC--GGCGGuGUGGCCG--GGCCGc -3'
miRNA:   3'- -UGGGGugUCGUC-CACCGGUagCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 31161 0.69 0.243733
Target:  5'- aACCCgGCGGCGGuGcugGGCCAgaUCGGgCAa -3'
miRNA:   3'- -UGGGgUGUCGUC-Ca--CCGGU--AGCCgGU- -5'
19246 3' -62.1 NC_004684.1 + 52582 0.69 0.249831
Target:  5'- cGCCCCACAGUccGGUGGaCAgCGcGCCGc -3'
miRNA:   3'- -UGGGGUGUCGu-CCACCgGUaGC-CGGU- -5'
19246 3' -62.1 NC_004684.1 + 63775 0.69 0.249831
Target:  5'- -gCCgACAGCAGGgugaaGGCC-UUGGCCu -3'
miRNA:   3'- ugGGgUGUCGUCCa----CCGGuAGCCGGu -5'
19246 3' -62.1 NC_004684.1 + 15392 0.69 0.249831
Target:  5'- cGCCCCGaucuacCGGCAGGgcgcgaUGGCCGacaccgUGGCCAc -3'
miRNA:   3'- -UGGGGU------GUCGUCC------ACCGGUa-----GCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 54521 0.69 0.256055
Target:  5'- cCCCgGCGGCGgccucggcGGUGGCgGccUCGGCCu -3'
miRNA:   3'- uGGGgUGUCGU--------CCACCGgU--AGCCGGu -5'
19246 3' -62.1 NC_004684.1 + 57224 0.69 0.256055
Target:  5'- aACUCCucgAGCGcGGUGGCCAgcggCGGCUg -3'
miRNA:   3'- -UGGGGug-UCGU-CCACCGGUa---GCCGGu -5'
19246 3' -62.1 NC_004684.1 + 13162 0.69 0.256055
Target:  5'- uGCCCUggaACAGCuGcUGGCCGaccUCGGCCc -3'
miRNA:   3'- -UGGGG---UGUCGuCcACCGGU---AGCCGGu -5'
19246 3' -62.1 NC_004684.1 + 21989 0.69 0.262405
Target:  5'- gACCCgCGCGGUccAGGaGGCCAUgGGgCCGg -3'
miRNA:   3'- -UGGG-GUGUCG--UCCaCCGGUAgCC-GGU- -5'
19246 3' -62.1 NC_004684.1 + 13350 0.69 0.262405
Target:  5'- aACCCUACGGCGGGcacacccGCCAcgaaGGCCGa -3'
miRNA:   3'- -UGGGGUGUCGUCCac-----CGGUag--CCGGU- -5'
19246 3' -62.1 NC_004684.1 + 5326 0.69 0.262405
Target:  5'- gACCgUGCAGCaguGGGUGGCgGUgGGCUg -3'
miRNA:   3'- -UGGgGUGUCG---UCCACCGgUAgCCGGu -5'
19246 3' -62.1 NC_004684.1 + 22697 0.69 0.262405
Target:  5'- gGCCCCgGCGgcGCAGGacgUGGCCAa-GGCCGu -3'
miRNA:   3'- -UGGGG-UGU--CGUCC---ACCGGUagCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 66630 0.69 0.262405
Target:  5'- -gCCUGCGGCcuuGGUGGCCAcgaUGGCCu -3'
miRNA:   3'- ugGGGUGUCGu--CCACCGGUa--GCCGGu -5'
19246 3' -62.1 NC_004684.1 + 55912 0.69 0.262405
Target:  5'- uACCgCCGgAGCuGGUGGCCAaggUGGaCCGg -3'
miRNA:   3'- -UGG-GGUgUCGuCCACCGGUa--GCC-GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.