miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19246 3' -62.1 NC_004684.1 + 57672 1.08 0.000311
Target:  5'- gACCCCACAGCAGGUGGCCAUCGGCCAg -3'
miRNA:   3'- -UGGGGUGUCGUCCACCGGUAGCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 51963 0.82 0.026481
Target:  5'- gGCUCCAgCAGCAGGgUGGCCAcggugUCGGCCAu -3'
miRNA:   3'- -UGGGGU-GUCGUCC-ACCGGU-----AGCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 51200 0.78 0.058461
Target:  5'- cGCCCUGgccguacaucguggcCAGCAGGaucaccuUGGCCAUCGGCCGg -3'
miRNA:   3'- -UGGGGU---------------GUCGUCC-------ACCGGUAGCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 57242 0.77 0.07035
Target:  5'- cGCCCCACcugGGCGGGcGGCacCGUCGGCCc -3'
miRNA:   3'- -UGGGGUG---UCGUCCaCCG--GUAGCCGGu -5'
19246 3' -62.1 NC_004684.1 + 12905 0.75 0.100357
Target:  5'- cGCCgCCAgCGGUgccGGUGcGCCGUCGGCCAa -3'
miRNA:   3'- -UGG-GGU-GUCGu--CCAC-CGGUAGCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 12004 0.74 0.105934
Target:  5'- gACCCCGCAGgAcuucgcggcggcGGUGGCCAa-GGCCAu -3'
miRNA:   3'- -UGGGGUGUCgU------------CCACCGGUagCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 40978 0.73 0.124459
Target:  5'- aACCCCGCugccAGCGcgccGGUGGCggCGUUGGCCAg -3'
miRNA:   3'- -UGGGGUG----UCGU----CCACCG--GUAGCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 67075 0.73 0.138435
Target:  5'- -aCCCGguGCGGGcguUGGCCucggCGGCCAg -3'
miRNA:   3'- ugGGGUguCGUCC---ACCGGua--GCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 49271 0.72 0.151432
Target:  5'- cGCCCaGCAGCAGGUaGCCGUacugcuuaccggaggUGGCCAc -3'
miRNA:   3'- -UGGGgUGUCGUCCAcCGGUA---------------GCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 1514 0.72 0.153434
Target:  5'- gACCaCUACGGCgucaaccccuccgAGGUGGCCAccagCGGCCc -3'
miRNA:   3'- -UGG-GGUGUCG-------------UCCACCGGUa---GCCGGu -5'
19246 3' -62.1 NC_004684.1 + 7920 0.72 0.162108
Target:  5'- gGCCgCGCAGguGGUGGaCAUCGccGCCGa -3'
miRNA:   3'- -UGGgGUGUCguCCACCgGUAGC--CGGU- -5'
19246 3' -62.1 NC_004684.1 + 65008 0.72 0.162108
Target:  5'- cGCCgCACccGGCgaAGGUGGCCAUgucgauggCGGCCAc -3'
miRNA:   3'- -UGGgGUG--UCG--UCCACCGGUA--------GCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 49089 0.72 0.166392
Target:  5'- cGCCgCCAacCGGCAGGUGccacaggucGCCGUCGGCg- -3'
miRNA:   3'- -UGG-GGU--GUCGUCCAC---------CGGUAGCCGgu -5'
19246 3' -62.1 NC_004684.1 + 60965 0.71 0.189365
Target:  5'- cACCUCGUGGCuGGUGG-CGUCGGCCu -3'
miRNA:   3'- -UGGGGUGUCGuCCACCgGUAGCCGGu -5'
19246 3' -62.1 NC_004684.1 + 10038 0.71 0.192302
Target:  5'- gACCCCGCccucaccGGCGGGgucuuuugucugugUGGCCuaCGGCCAg -3'
miRNA:   3'- -UGGGGUG-------UCGUCC--------------ACCGGuaGCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 25994 0.71 0.194282
Target:  5'- cACCgCgACGGUAGGUcgaauaGCCAUCGGCCc -3'
miRNA:   3'- -UGG-GgUGUCGUCCAc-----CGGUAGCCGGu -5'
19246 3' -62.1 NC_004684.1 + 63531 0.71 0.194282
Target:  5'- cACUgCGCAGCGGcgugccuucgguGUGGUCGUCGGUCGg -3'
miRNA:   3'- -UGGgGUGUCGUC------------CACCGGUAGCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 25041 0.71 0.199311
Target:  5'- uGCCUUuccgguugGCGauGUAGGUGGCCAgggCGGCCGg -3'
miRNA:   3'- -UGGGG--------UGU--CGUCCACCGGUa--GCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 54285 0.7 0.204452
Target:  5'- cACCCgGCcGgGGGUGcGCgCAUCGGCCc -3'
miRNA:   3'- -UGGGgUGuCgUCCAC-CG-GUAGCCGGu -5'
19246 3' -62.1 NC_004684.1 + 48002 0.7 0.209709
Target:  5'- aACgCCCACAGCAccaugacagcGGUGuCC-UCGGCCAu -3'
miRNA:   3'- -UG-GGGUGUCGU----------CCACcGGuAGCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.