miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19246 3' -62.1 NC_004684.1 + 349 0.67 0.356769
Target:  5'- aGCgUgCGCAGCAgcucGGUGGCCA--GGCCAu -3'
miRNA:   3'- -UG-GgGUGUCGU----CCACCGGUagCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 1255 0.66 0.40771
Target:  5'- gGCCCCGgcccagaugcgcUGGCuGGUGGCCAUguucCGGUa- -3'
miRNA:   3'- -UGGGGU------------GUCGuCCACCGGUA----GCCGgu -5'
19246 3' -62.1 NC_004684.1 + 1514 0.72 0.153434
Target:  5'- gACCaCUACGGCgucaaccccuccgAGGUGGCCAccagCGGCCc -3'
miRNA:   3'- -UGG-GGUGUCG-------------UCCACCGGUa---GCCGGu -5'
19246 3' -62.1 NC_004684.1 + 2965 0.67 0.317856
Target:  5'- cGCgCUGCuguuGCGGGUGGCCAacggguugaGGCCAu -3'
miRNA:   3'- -UGgGGUGu---CGUCCACCGGUag-------CCGGU- -5'
19246 3' -62.1 NC_004684.1 + 4032 0.67 0.317856
Target:  5'- cACCggCAUGGCGacGGUGGCCuacCGGCCAu -3'
miRNA:   3'- -UGGg-GUGUCGU--CCACCGGua-GCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 4168 0.7 0.22224
Target:  5'- cGCCCgGCAacgagccGCcGGUGGCCGagaagauggggccguUCGGCCGc -3'
miRNA:   3'- -UGGGgUGU-------CGuCCACCGGU---------------AGCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 5168 0.66 0.373245
Target:  5'- uACCCCGauGUcgAGGUGGCgCugGUUGGCCAg -3'
miRNA:   3'- -UGGGGUguCG--UCCACCG-G--UAGCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 5326 0.69 0.262405
Target:  5'- gACCgUGCAGCaguGGGUGGCgGUgGGCUg -3'
miRNA:   3'- -UGGgGUGUCG---UCCACCGgUAgCCGGu -5'
19246 3' -62.1 NC_004684.1 + 5666 0.66 0.40771
Target:  5'- uGCCUCAgccgUGGUcggAGGUGGCCGgggccCGGCCu -3'
miRNA:   3'- -UGGGGU----GUCG---UCCACCGGUa----GCCGGu -5'
19246 3' -62.1 NC_004684.1 + 7920 0.72 0.162108
Target:  5'- gGCCgCGCAGguGGUGGaCAUCGccGCCGa -3'
miRNA:   3'- -UGGgGUGUCguCCACCgGUAGC--CGGU- -5'
19246 3' -62.1 NC_004684.1 + 9806 0.68 0.296084
Target:  5'- cACCaCCGuCGGUAGGUugcgGGCgauGUCGGCCAa -3'
miRNA:   3'- -UGG-GGU-GUCGUCCA----CCGg--UAGCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 10038 0.71 0.192302
Target:  5'- gACCCCGCccucaccGGCGGGgucuuuugucugugUGGCCuaCGGCCAg -3'
miRNA:   3'- -UGGGGUG-------UCGUCC--------------ACCGGuaGCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 10552 0.68 0.282224
Target:  5'- uGCUCCAcCAGCugcgccAGGUGGUCGUggucgaUGGCCAc -3'
miRNA:   3'- -UGGGGU-GUCG------UCCACCGGUA------GCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 11363 0.66 0.40771
Target:  5'- -gCCCACGGU-GGUGGCCAgcagcgUGGUg- -3'
miRNA:   3'- ugGGGUGUCGuCCACCGGUa-----GCCGgu -5'
19246 3' -62.1 NC_004684.1 + 11467 0.66 0.402415
Target:  5'- cGCCCCGguccaccuuggccacCAGCuccggcGGUaacaGGCCAUCGGgCAg -3'
miRNA:   3'- -UGGGGU---------------GUCGu-----CCA----CCGGUAGCCgGU- -5'
19246 3' -62.1 NC_004684.1 + 11602 0.67 0.356769
Target:  5'- uGCgCCUggacgACGGCAccgaGcUGGCCGUCGGCCGc -3'
miRNA:   3'- -UG-GGG-----UGUCGU----CcACCGGUAGCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 11828 0.68 0.275489
Target:  5'- gACCCC-CGGCcaccgGGCCAcggCGGCCAg -3'
miRNA:   3'- -UGGGGuGUCGucca-CCGGUa--GCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 12004 0.74 0.105934
Target:  5'- gACCCCGCAGgAcuucgcggcggcGGUGGCCAa-GGCCAu -3'
miRNA:   3'- -UGGGGUGUCgU------------CCACCGGUagCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 12905 0.75 0.100357
Target:  5'- cGCCgCCAgCGGUgccGGUGcGCCGUCGGCCAa -3'
miRNA:   3'- -UGG-GGU-GUCGu--CCAC-CGGUAGCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 13114 0.66 0.398908
Target:  5'- cACCCC-CGGcCGGGUGGCgGcgcUGGCUg -3'
miRNA:   3'- -UGGGGuGUC-GUCCACCGgUa--GCCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.