miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19246 3' -62.1 NC_004684.1 + 21989 0.69 0.262405
Target:  5'- gACCCgCGCGGUccAGGaGGCCAUgGGgCCGg -3'
miRNA:   3'- -UGGG-GUGUCG--UCCaCCGGUAgCC-GGU- -5'
19246 3' -62.1 NC_004684.1 + 62463 0.7 0.226179
Target:  5'- cGCUCC--GGgAGGUGGCCGUUGGCg- -3'
miRNA:   3'- -UGGGGugUCgUCCACCGGUAGCCGgu -5'
19246 3' -62.1 NC_004684.1 + 28238 0.69 0.237759
Target:  5'- cACCCggagCACAGCGcGGUGGaCC--CGGCCAg -3'
miRNA:   3'- -UGGG----GUGUCGU-CCACC-GGuaGCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 43892 0.69 0.237759
Target:  5'- cAUCgCugGGCAGGUGGaugaCA-CGGCCAu -3'
miRNA:   3'- -UGGgGugUCGUCCACCg---GUaGCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 31161 0.69 0.243733
Target:  5'- aACCCgGCGGCGGuGcugGGCCAgaUCGGgCAa -3'
miRNA:   3'- -UGGGgUGUCGUC-Ca--CCGGU--AGCCgGU- -5'
19246 3' -62.1 NC_004684.1 + 28067 0.69 0.243733
Target:  5'- gGCCCC--GGCGGuGUGGCCG--GGCCGc -3'
miRNA:   3'- -UGGGGugUCGUC-CACCGGUagCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 63775 0.69 0.249831
Target:  5'- -gCCgACAGCAGGgugaaGGCC-UUGGCCu -3'
miRNA:   3'- ugGGgUGUCGUCCa----CCGGuAGCCGGu -5'
19246 3' -62.1 NC_004684.1 + 55912 0.69 0.262405
Target:  5'- uACCgCCGgAGCuGGUGGCCAaggUGGaCCGg -3'
miRNA:   3'- -UGG-GGUgUCGuCCACCGGUa--GCC-GGU- -5'
19246 3' -62.1 NC_004684.1 + 66630 0.69 0.262405
Target:  5'- -gCCUGCGGCcuuGGUGGCCAcgaUGGCCu -3'
miRNA:   3'- ugGGGUGUCGu--CCACCGGUa--GCCGGu -5'
19246 3' -62.1 NC_004684.1 + 33835 0.7 0.215081
Target:  5'- uGCCCgGCGGCGGcGgcaacggGGCCAaccaaggaucguUCGGCCu -3'
miRNA:   3'- -UGGGgUGUCGUC-Ca------CCGGU------------AGCCGGu -5'
19246 3' -62.1 NC_004684.1 + 54285 0.7 0.204452
Target:  5'- cACCCgGCcGgGGGUGcGCgCAUCGGCCc -3'
miRNA:   3'- -UGGGgUGuCgUCCAC-CG-GUAGCCGGu -5'
19246 3' -62.1 NC_004684.1 + 60965 0.71 0.189365
Target:  5'- cACCUCGUGGCuGGUGG-CGUCGGCCu -3'
miRNA:   3'- -UGGGGUGUCGuCCACCgGUAGCCGGu -5'
19246 3' -62.1 NC_004684.1 + 51963 0.82 0.026481
Target:  5'- gGCUCCAgCAGCAGGgUGGCCAcggugUCGGCCAu -3'
miRNA:   3'- -UGGGGU-GUCGUCC-ACCGGU-----AGCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 51200 0.78 0.058461
Target:  5'- cGCCCUGgccguacaucguggcCAGCAGGaucaccuUGGCCAUCGGCCGg -3'
miRNA:   3'- -UGGGGU---------------GUCGUCC-------ACCGGUAGCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 57242 0.77 0.07035
Target:  5'- cGCCCCACcugGGCGGGcGGCacCGUCGGCCc -3'
miRNA:   3'- -UGGGGUG---UCGUCCaCCG--GUAGCCGGu -5'
19246 3' -62.1 NC_004684.1 + 12905 0.75 0.100357
Target:  5'- cGCCgCCAgCGGUgccGGUGcGCCGUCGGCCAa -3'
miRNA:   3'- -UGG-GGU-GUCGu--CCAC-CGGUAGCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 12004 0.74 0.105934
Target:  5'- gACCCCGCAGgAcuucgcggcggcGGUGGCCAa-GGCCAu -3'
miRNA:   3'- -UGGGGUGUCgU------------CCACCGGUagCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 67075 0.73 0.138435
Target:  5'- -aCCCGguGCGGGcguUGGCCucggCGGCCAg -3'
miRNA:   3'- ugGGGUguCGUCC---ACCGGua--GCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 1514 0.72 0.153434
Target:  5'- gACCaCUACGGCgucaaccccuccgAGGUGGCCAccagCGGCCc -3'
miRNA:   3'- -UGG-GGUGUCG-------------UCCACCGGUa---GCCGGu -5'
19246 3' -62.1 NC_004684.1 + 49089 0.72 0.166392
Target:  5'- cGCCgCCAacCGGCAGGUGccacaggucGCCGUCGGCg- -3'
miRNA:   3'- -UGG-GGU--GUCGUCCAC---------CGGUAGCCGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.