miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19246 3' -62.1 NC_004684.1 + 5168 0.66 0.373245
Target:  5'- uACCCCGauGUcgAGGUGGCgCugGUUGGCCAg -3'
miRNA:   3'- -UGGGGUguCG--UCCACCG-G--UAGCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 25852 0.66 0.416633
Target:  5'- uGCUCgGCGGCcuGUucaacGGCC-UCGGCCAg -3'
miRNA:   3'- -UGGGgUGUCGucCA-----CCGGuAGCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 60738 0.66 0.364943
Target:  5'- uGCCCgGCGacCGGGUGGCCgccggguggggGUUGGUCAg -3'
miRNA:   3'- -UGGGgUGUc-GUCCACCGG-----------UAGCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 65978 0.66 0.364943
Target:  5'- gGCCCgGCAGgccucCAGGUcgcuGGCCAgugcaacggCGGCCu -3'
miRNA:   3'- -UGGGgUGUC-----GUCCA----CCGGUa--------GCCGGu -5'
19246 3' -62.1 NC_004684.1 + 52281 0.66 0.373245
Target:  5'- gUCCCggugACGGCaAGGUcGGCCuccagggCGGCCAc -3'
miRNA:   3'- uGGGG----UGUCG-UCCA-CCGGua-----GCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 40086 0.66 0.416633
Target:  5'- cGCagauaCCGCAGCGGccgaucucGUGGCCGUagcgggcgcuggCGGCCu -3'
miRNA:   3'- -UGg----GGUGUCGUC--------CACCGGUA------------GCCGGu -5'
19246 3' -62.1 NC_004684.1 + 22923 0.66 0.381674
Target:  5'- -gUCCACGcgcacGCAGGUGGCCAgCGuGCuCAg -3'
miRNA:   3'- ugGGGUGU-----CGUCCACCGGUaGC-CG-GU- -5'
19246 3' -62.1 NC_004684.1 + 16749 0.66 0.381674
Target:  5'- cACCCCcgACGGCGGuGUcgacuGGUUcuguGUCGGCCAc -3'
miRNA:   3'- -UGGGG--UGUCGUC-CA-----CCGG----UAGCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 19466 0.66 0.373245
Target:  5'- gGCCUggaaGCAGaAGGUGGCCGa-GGCCGc -3'
miRNA:   3'- -UGGGg---UGUCgUCCACCGGUagCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 47863 0.66 0.416633
Target:  5'- cGCaCCCGCAGCuGGcguUGaGCCAgugCGuGCCGu -3'
miRNA:   3'- -UG-GGGUGUCGuCC---AC-CGGUa--GC-CGGU- -5'
19246 3' -62.1 NC_004684.1 + 55595 0.66 0.381674
Target:  5'- cGCCCUucucCAcGGUGGCCugGUCGGCCc -3'
miRNA:   3'- -UGGGGugucGU-CCACCGG--UAGCCGGu -5'
19246 3' -62.1 NC_004684.1 + 61331 0.66 0.416633
Target:  5'- cGCCCUcgGCGGCguAGGUGGC----GGCCAg -3'
miRNA:   3'- -UGGGG--UGUCG--UCCACCGguagCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 50329 0.66 0.364943
Target:  5'- cGCCCgGCcaGGCGGGcGGCCuccuuggcAUCGGCa- -3'
miRNA:   3'- -UGGGgUG--UCGUCCaCCGG--------UAGCCGgu -5'
19246 3' -62.1 NC_004684.1 + 58378 0.66 0.390229
Target:  5'- cGCCCCGCAcggcaccgcGCGuGGaGGCC-UUGGCCc -3'
miRNA:   3'- -UGGGGUGU---------CGU-CCaCCGGuAGCCGGu -5'
19246 3' -62.1 NC_004684.1 + 64220 0.66 0.390229
Target:  5'- cACCUgggaCACGGCGu-UGGCC-UCGGCCAg -3'
miRNA:   3'- -UGGG----GUGUCGUccACCGGuAGCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 49535 0.66 0.40771
Target:  5'- cACCCgGCGGUGugcgcGGUGGCCGacuUCGGgCu -3'
miRNA:   3'- -UGGGgUGUCGU-----CCACCGGU---AGCCgGu -5'
19246 3' -62.1 NC_004684.1 + 1255 0.66 0.40771
Target:  5'- gGCCCCGgcccagaugcgcUGGCuGGUGGCCAUguucCGGUa- -3'
miRNA:   3'- -UGGGGU------------GUCGuCCACCGGUA----GCCGgu -5'
19246 3' -62.1 NC_004684.1 + 62683 0.66 0.373245
Target:  5'- -aCUCGCc-CAGGUGGaaAUCGGCCAc -3'
miRNA:   3'- ugGGGUGucGUCCACCggUAGCCGGU- -5'
19246 3' -62.1 NC_004684.1 + 61647 0.66 0.402415
Target:  5'- cCCCCGgaggugucggcgaagUAGCAGGUGugcgccugcacGCCAUUGGCg- -3'
miRNA:   3'- uGGGGU---------------GUCGUCCAC-----------CGGUAGCCGgu -5'
19246 3' -62.1 NC_004684.1 + 50022 0.66 0.393686
Target:  5'- cACCgUcgGCGGCAGcGUGGCCGgugccuggcuccaGGCCAg -3'
miRNA:   3'- -UGGgG--UGUCGUC-CACCGGUag-----------CCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.