miRNA display CGI


Results 21 - 40 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19247 5' -57.4 NC_004684.1 + 57113 0.72 0.347273
Target:  5'- aCCugGAGC-GACCGcugGCaGCACUG-GCg -3'
miRNA:   3'- -GGugCUCGaCUGGCa--CG-CGUGGCaCG- -5'
19247 5' -57.4 NC_004684.1 + 16132 0.72 0.347273
Target:  5'- gUACGAGCcGAUCaUGCGCG-CGUGCg -3'
miRNA:   3'- gGUGCUCGaCUGGcACGCGUgGCACG- -5'
19247 5' -57.4 NC_004684.1 + 54282 0.72 0.355355
Target:  5'- gCCGC--GCUGGCCGgugGgGCGgCGUGCa -3'
miRNA:   3'- -GGUGcuCGACUGGCa--CgCGUgGCACG- -5'
19247 5' -57.4 NC_004684.1 + 11441 0.72 0.355355
Target:  5'- cCCG-GAGCUGACCGggccgacGCGCACCa--- -3'
miRNA:   3'- -GGUgCUCGACUGGCa------CGCGUGGcacg -5'
19247 5' -57.4 NC_004684.1 + 7853 0.72 0.355355
Target:  5'- gCGCGcGCUGGCgGUGCaGgACCuGUGCg -3'
miRNA:   3'- gGUGCuCGACUGgCACG-CgUGG-CACG- -5'
19247 5' -57.4 NC_004684.1 + 21341 0.72 0.355355
Target:  5'- gCCGCGcGGCaaGACCGUGCGCAUCa--- -3'
miRNA:   3'- -GGUGC-UCGa-CUGGCACGCGUGGcacg -5'
19247 5' -57.4 NC_004684.1 + 17066 0.72 0.355355
Target:  5'- gCCGCccGcCUGGCCGgGCGCACCGacuggGCa -3'
miRNA:   3'- -GGUGcuC-GACUGGCaCGCGUGGCa----CG- -5'
19247 5' -57.4 NC_004684.1 + 27754 0.72 0.363568
Target:  5'- aCCugGAGgUGACCGUGcCGCGCg---- -3'
miRNA:   3'- -GGugCUCgACUGGCAC-GCGUGgcacg -5'
19247 5' -57.4 NC_004684.1 + 34986 0.72 0.363568
Target:  5'- cCCugGAGCaGGCCGUGCugauccggGUgACgCGUGCg -3'
miRNA:   3'- -GGugCUCGaCUGGCACG--------CG-UG-GCACG- -5'
19247 5' -57.4 NC_004684.1 + 2073 0.72 0.363568
Target:  5'- gCCugGcGCUGGCCGUgGUGCacagcgaggccGCCGUcGCg -3'
miRNA:   3'- -GGugCuCGACUGGCA-CGCG-----------UGGCA-CG- -5'
19247 5' -57.4 NC_004684.1 + 39586 0.71 0.371913
Target:  5'- aCCAgGAGCaggccagGACCGaaccgccGCGCACCGUcggGCg -3'
miRNA:   3'- -GGUgCUCGa------CUGGCa------CGCGUGGCA---CG- -5'
19247 5' -57.4 NC_004684.1 + 30198 0.71 0.380386
Target:  5'- aCCAgcAGCUGGCCGcGCGCGUCGaUGCu -3'
miRNA:   3'- -GGUgcUCGACUGGCaCGCGUGGC-ACG- -5'
19247 5' -57.4 NC_004684.1 + 7326 0.71 0.397717
Target:  5'- gCACGGGCc-GCCGggccGCGCGCCacgaGUGCg -3'
miRNA:   3'- gGUGCUCGacUGGCa---CGCGUGG----CACG- -5'
19247 5' -57.4 NC_004684.1 + 33221 0.71 0.397717
Target:  5'- gCGUGAGCUcGGgCGUGCcggugagcaGCACCGUGCc -3'
miRNA:   3'- gGUGCUCGA-CUgGCACG---------CGUGGCACG- -5'
19247 5' -57.4 NC_004684.1 + 23206 0.71 0.403901
Target:  5'- aCCGCGAGgUG-CUG-GCGCgcgccggguucaucGCCGUGCc -3'
miRNA:   3'- -GGUGCUCgACuGGCaCGCG--------------UGGCACG- -5'
19247 5' -57.4 NC_004684.1 + 66523 0.71 0.405679
Target:  5'- aUCACGuGCUGGCCGUccucgucGCGUAgCUGUaGCa -3'
miRNA:   3'- -GGUGCuCGACUGGCA-------CGCGU-GGCA-CG- -5'
19247 5' -57.4 NC_004684.1 + 62647 0.71 0.40657
Target:  5'- gUCGCGgcacuugcGGCUGugGCCGUGCGCgagguccugGCCGUaGCa -3'
miRNA:   3'- -GGUGC--------UCGAC--UGGCACGCG---------UGGCA-CG- -5'
19247 5' -57.4 NC_004684.1 + 7331 0.71 0.40657
Target:  5'- aCGCGuGCUcGgugugcaacccGCCgGUGCGCGCCGUGg -3'
miRNA:   3'- gGUGCuCGA-C-----------UGG-CACGCGUGGCACg -5'
19247 5' -57.4 NC_004684.1 + 1140 0.71 0.40657
Target:  5'- gCCACG-GCauGCCGgGCGUgccgACCGUGCa -3'
miRNA:   3'- -GGUGCuCGacUGGCaCGCG----UGGCACG- -5'
19247 5' -57.4 NC_004684.1 + 51811 0.71 0.40657
Target:  5'- uCCACG-GCcaGGCCGcGCGCGCUGcGCu -3'
miRNA:   3'- -GGUGCuCGa-CUGGCaCGCGUGGCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.