miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19247 5' -57.4 NC_004684.1 + 58062 1.14 0.000438
Target:  5'- gCCACGAGCUGACCGUGCGCACCGUGCa -3'
miRNA:   3'- -GGUGCUCGACUGGCACGCGUGGCACG- -5'
19247 5' -57.4 NC_004684.1 + 6774 0.83 0.063383
Target:  5'- gCAUGGGCgacgugcgccgggUGACCGgccUGCGCACCGUGCg -3'
miRNA:   3'- gGUGCUCG-------------ACUGGC---ACGCGUGGCACG- -5'
19247 5' -57.4 NC_004684.1 + 21370 0.81 0.086192
Target:  5'- aCCugGAcaaGCUGGacgaCGUGCGCACCGUGg -3'
miRNA:   3'- -GGugCU---CGACUg---GCACGCGUGGCACg -5'
19247 5' -57.4 NC_004684.1 + 65755 0.79 0.126173
Target:  5'- cUCGCGGGCguUGGCCGccGCGCGCCGguggGCg -3'
miRNA:   3'- -GGUGCUCG--ACUGGCa-CGCGUGGCa---CG- -5'
19247 5' -57.4 NC_004684.1 + 29564 0.78 0.140438
Target:  5'- -aGCGAGaUGACCGcuguguaggGCGCGCCGUGCc -3'
miRNA:   3'- ggUGCUCgACUGGCa--------CGCGUGGCACG- -5'
19247 5' -57.4 NC_004684.1 + 54469 0.77 0.178061
Target:  5'- gCgGCGaAGUUGGCCGacgGCGCACCG-GCa -3'
miRNA:   3'- -GgUGC-UCGACUGGCa--CGCGUGGCaCG- -5'
19247 5' -57.4 NC_004684.1 + 10236 0.75 0.235964
Target:  5'- gCGCGAgcaGCUGGCCGUGCGCGUgGaGCg -3'
miRNA:   3'- gGUGCU---CGACUGGCACGCGUGgCaCG- -5'
19247 5' -57.4 NC_004684.1 + 37573 0.74 0.248055
Target:  5'- aCCGgGAGCUGGagGUGCccggcaucgGUACCGUGCg -3'
miRNA:   3'- -GGUgCUCGACUggCACG---------CGUGGCACG- -5'
19247 5' -57.4 NC_004684.1 + 10428 0.74 0.25429
Target:  5'- gCACaGGUUGGCCuccacgcUGUGCGCCGUGCa -3'
miRNA:   3'- gGUGcUCGACUGGc------ACGCGUGGCACG- -5'
19247 5' -57.4 NC_004684.1 + 15056 0.74 0.260653
Target:  5'- gCugGAuccgauucGCUGGCC-UGCGCACCGcGCa -3'
miRNA:   3'- gGugCU--------CGACUGGcACGCGUGGCaCG- -5'
19247 5' -57.4 NC_004684.1 + 9314 0.74 0.267145
Target:  5'- cCCGguCGAGCUGcACgGUGCGCACgGUcaGCu -3'
miRNA:   3'- -GGU--GCUCGAC-UGgCACGCGUGgCA--CG- -5'
19247 5' -57.4 NC_004684.1 + 39132 0.74 0.273767
Target:  5'- cUCGCGcaccaGGCUGGCCGgguccacCGCGCUGUGCu -3'
miRNA:   3'- -GGUGC-----UCGACUGGCac-----GCGUGGCACG- -5'
19247 5' -57.4 NC_004684.1 + 63070 0.74 0.273767
Target:  5'- -gGCG-GCU-ACCGUGC-CGCCGUGCa -3'
miRNA:   3'- ggUGCuCGAcUGGCACGcGUGGCACG- -5'
19247 5' -57.4 NC_004684.1 + 66376 0.74 0.280521
Target:  5'- gCCGCGAGCUGcGCgGUGgaaaucucCGCACCuugGUGCu -3'
miRNA:   3'- -GGUGCUCGAC-UGgCAC--------GCGUGG---CACG- -5'
19247 5' -57.4 NC_004684.1 + 9535 0.73 0.285326
Target:  5'- aCCGCGAGCUGgugcgccgguuggaGCCG-GUGCGCCGc-- -3'
miRNA:   3'- -GGUGCUCGAC--------------UGGCaCGCGUGGCacg -5'
19247 5' -57.4 NC_004684.1 + 49999 0.73 0.287406
Target:  5'- uCCACaauCUGACCGggugUGCGCACCGUcgGCg -3'
miRNA:   3'- -GGUGcucGACUGGC----ACGCGUGGCA--CG- -5'
19247 5' -57.4 NC_004684.1 + 4302 0.73 0.294423
Target:  5'- aCACGAGUggGACgCG-GUGCACCGgGCg -3'
miRNA:   3'- gGUGCUCGa-CUG-GCaCGCGUGGCaCG- -5'
19247 5' -57.4 NC_004684.1 + 5029 0.72 0.323823
Target:  5'- aCCGCGAcgacgaggugcGCaGGCUGgcGCGCGCUGUGCu -3'
miRNA:   3'- -GGUGCU-----------CGaCUGGCa-CGCGUGGCACG- -5'
19247 5' -57.4 NC_004684.1 + 27831 0.72 0.323823
Target:  5'- -gGCGAcuccuGCUGggcACCGaGCGCGCUGUGCa -3'
miRNA:   3'- ggUGCU-----CGAC---UGGCaCGCGUGGCACG- -5'
19247 5' -57.4 NC_004684.1 + 39224 0.72 0.339323
Target:  5'- aCCGCucGCUGAUCuUGCGCGCCGa-- -3'
miRNA:   3'- -GGUGcuCGACUGGcACGCGUGGCacg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.