miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19247 5' -57.4 NC_004684.1 + 48965 0.7 0.452626
Target:  5'- -gGCGGGgUGGCCGgggcggGCGCGuCgGUGCc -3'
miRNA:   3'- ggUGCUCgACUGGCa-----CGCGU-GgCACG- -5'
19247 5' -57.4 NC_004684.1 + 34986 0.72 0.363568
Target:  5'- cCCugGAGCaGGCCGUGCugauccggGUgACgCGUGCg -3'
miRNA:   3'- -GGugCUCGaCUGGCACG--------CG-UG-GCACG- -5'
19247 5' -57.4 NC_004684.1 + 1140 0.71 0.40657
Target:  5'- gCCACG-GCauGCCGgGCGUgccgACCGUGCa -3'
miRNA:   3'- -GGUGCuCGacUGGCaCGCG----UGGCACG- -5'
19247 5' -57.4 NC_004684.1 + 7331 0.71 0.40657
Target:  5'- aCGCGuGCUcGgugugcaacccGCCgGUGCGCGCCGUGg -3'
miRNA:   3'- gGUGCuCGA-C-----------UGG-CACGCGUGGCACg -5'
19247 5' -57.4 NC_004684.1 + 51811 0.71 0.40657
Target:  5'- uCCACG-GCcaGGCCGcGCGCGCUGcGCu -3'
miRNA:   3'- -GGUGCuCGa-CUGGCaCGCGUGGCaCG- -5'
19247 5' -57.4 NC_004684.1 + 50657 0.71 0.415545
Target:  5'- gUCGgGGGUgcgGACCaggcGUGCGCccgguGCCGUGCa -3'
miRNA:   3'- -GGUgCUCGa--CUGG----CACGCG-----UGGCACG- -5'
19247 5' -57.4 NC_004684.1 + 9470 0.7 0.424642
Target:  5'- gCugGAGCUGGCgGgcaaGCGCAgCCGUa- -3'
miRNA:   3'- gGugCUCGACUGgCa---CGCGU-GGCAcg -5'
19247 5' -57.4 NC_004684.1 + 24725 0.7 0.433855
Target:  5'- aCAcCGAGCUGGgCGUGCuGCGCCa--- -3'
miRNA:   3'- gGU-GCUCGACUgGCACG-CGUGGcacg -5'
19247 5' -57.4 NC_004684.1 + 26509 0.7 0.433855
Target:  5'- gCACGuGCUGACCaccgcugacGUGuCGCGCCuggGCg -3'
miRNA:   3'- gGUGCuCGACUGG---------CAC-GCGUGGca-CG- -5'
19247 5' -57.4 NC_004684.1 + 11441 0.72 0.355355
Target:  5'- cCCG-GAGCUGACCGggccgacGCGCACCa--- -3'
miRNA:   3'- -GGUgCUCGACUGGCa------CGCGUGGcacg -5'
19247 5' -57.4 NC_004684.1 + 57113 0.72 0.347273
Target:  5'- aCCugGAGC-GACCGcugGCaGCACUG-GCg -3'
miRNA:   3'- -GGugCUCGaCUGGCa--CG-CGUGGCaCG- -5'
19247 5' -57.4 NC_004684.1 + 39224 0.72 0.339323
Target:  5'- aCCGCucGCUGAUCuUGCGCGCCGa-- -3'
miRNA:   3'- -GGUGcuCGACUGGcACGCGUGGCacg -5'
19247 5' -57.4 NC_004684.1 + 65755 0.79 0.126173
Target:  5'- cUCGCGGGCguUGGCCGccGCGCGCCGguggGCg -3'
miRNA:   3'- -GGUGCUCG--ACUGGCa-CGCGUGGCa---CG- -5'
19247 5' -57.4 NC_004684.1 + 10236 0.75 0.235964
Target:  5'- gCGCGAgcaGCUGGCCGUGCGCGUgGaGCg -3'
miRNA:   3'- gGUGCU---CGACUGGCACGCGUGgCaCG- -5'
19247 5' -57.4 NC_004684.1 + 37573 0.74 0.248055
Target:  5'- aCCGgGAGCUGGagGUGCccggcaucgGUACCGUGCg -3'
miRNA:   3'- -GGUgCUCGACUggCACG---------CGUGGCACG- -5'
19247 5' -57.4 NC_004684.1 + 63070 0.74 0.273767
Target:  5'- -gGCG-GCU-ACCGUGC-CGCCGUGCa -3'
miRNA:   3'- ggUGCuCGAcUGGCACGcGUGGCACG- -5'
19247 5' -57.4 NC_004684.1 + 9535 0.73 0.285326
Target:  5'- aCCGCGAGCUGgugcgccgguuggaGCCG-GUGCGCCGc-- -3'
miRNA:   3'- -GGUGCUCGAC--------------UGGCaCGCGUGGCacg -5'
19247 5' -57.4 NC_004684.1 + 49999 0.73 0.287406
Target:  5'- uCCACaauCUGACCGggugUGCGCACCGUcgGCg -3'
miRNA:   3'- -GGUGcucGACUGGC----ACGCGUGGCA--CG- -5'
19247 5' -57.4 NC_004684.1 + 4302 0.73 0.294423
Target:  5'- aCACGAGUggGACgCG-GUGCACCGgGCg -3'
miRNA:   3'- gGUGCUCGa-CUG-GCaCGCGUGGCaCG- -5'
19247 5' -57.4 NC_004684.1 + 27831 0.72 0.323823
Target:  5'- -gGCGAcuccuGCUGggcACCGaGCGCGCUGUGCa -3'
miRNA:   3'- ggUGCU-----CGAC---UGGCaCGCGUGGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.