miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19247 5' -57.4 NC_004684.1 + 251 0.66 0.699571
Target:  5'- aCAcCGAGCUGAUCGccaacagccUGCGCACgCaugGCc -3'
miRNA:   3'- gGU-GCUCGACUGGC---------ACGCGUG-Gca-CG- -5'
19247 5' -57.4 NC_004684.1 + 1140 0.71 0.40657
Target:  5'- gCCACG-GCauGCCGgGCGUgccgACCGUGCa -3'
miRNA:   3'- -GGUGCuCGacUGGCaCGCG----UGGCACG- -5'
19247 5' -57.4 NC_004684.1 + 1563 0.69 0.501382
Target:  5'- aCCGCcuGCUGAUgGUGCGC-CUGUcuGCg -3'
miRNA:   3'- -GGUGcuCGACUGgCACGCGuGGCA--CG- -5'
19247 5' -57.4 NC_004684.1 + 1686 0.67 0.604684
Target:  5'- aCCAggcCGAGCUGGC---GCGCAUCGaGCg -3'
miRNA:   3'- -GGU---GCUCGACUGgcaCGCGUGGCaCG- -5'
19247 5' -57.4 NC_004684.1 + 2073 0.72 0.363568
Target:  5'- gCCugGcGCUGGCCGUgGUGCacagcgaggccGCCGUcGCg -3'
miRNA:   3'- -GGugCuCGACUGGCA-CGCG-----------UGGCA-CG- -5'
19247 5' -57.4 NC_004684.1 + 2296 0.67 0.604684
Target:  5'- gCCACGAcgcgguGCUGACCGccGUGCACgucgGUGa -3'
miRNA:   3'- -GGUGCU------CGACUGGCa-CGCGUGg---CACg -5'
19247 5' -57.4 NC_004684.1 + 2515 0.66 0.709939
Target:  5'- cCCGgGGGCgcGACCGgacaacGCGCACCa--- -3'
miRNA:   3'- -GGUgCUCGa-CUGGCa-----CGCGUGGcacg -5'
19247 5' -57.4 NC_004684.1 + 2984 0.69 0.481585
Target:  5'- gCCaACGGGUUGagGCCaucacCGCGCCGUGCa -3'
miRNA:   3'- -GG-UGCUCGAC--UGGcac--GCGUGGCACG- -5'
19247 5' -57.4 NC_004684.1 + 3025 0.67 0.63643
Target:  5'- aCCACaugGAGCUGACC--GCGCcgACCGgGUu -3'
miRNA:   3'- -GGUG---CUCGACUGGcaCGCG--UGGCaCG- -5'
19247 5' -57.4 NC_004684.1 + 3094 0.66 0.709939
Target:  5'- aCCACGAc--GGCCaggGCGCACUGcGCg -3'
miRNA:   3'- -GGUGCUcgaCUGGca-CGCGUGGCaCG- -5'
19247 5' -57.4 NC_004684.1 + 3252 0.66 0.65759
Target:  5'- aCCACGcuGCUGGCCuggccggacaucGUGgaCGCACUGcUGCc -3'
miRNA:   3'- -GGUGCu-CGACUGG------------CAC--GCGUGGC-ACG- -5'
19247 5' -57.4 NC_004684.1 + 3623 0.68 0.573132
Target:  5'- aCACGAG-UGGCCGaaGCGCGCCa--- -3'
miRNA:   3'- gGUGCUCgACUGGCa-CGCGUGGcacg -5'
19247 5' -57.4 NC_004684.1 + 3872 0.66 0.699571
Target:  5'- cCCGCGAGCUGcgacGCCaG-GC-CGCCcUGCu -3'
miRNA:   3'- -GGUGCUCGAC----UGG-CaCGcGUGGcACG- -5'
19247 5' -57.4 NC_004684.1 + 4302 0.73 0.294423
Target:  5'- aCACGAGUggGACgCG-GUGCACCGgGCg -3'
miRNA:   3'- gGUGCUCGa-CUG-GCaCGCGUGGCaCG- -5'
19247 5' -57.4 NC_004684.1 + 4502 0.69 0.521529
Target:  5'- cCCGcCGAGCUGGCg--GC-CACCGUGg -3'
miRNA:   3'- -GGU-GCUCGACUGgcaCGcGUGGCACg -5'
19247 5' -57.4 NC_004684.1 + 5029 0.72 0.323823
Target:  5'- aCCGCGAcgacgaggugcGCaGGCUGgcGCGCGCUGUGCu -3'
miRNA:   3'- -GGUGCU-----------CGaCUGGCa-CGCGUGGCACG- -5'
19247 5' -57.4 NC_004684.1 + 5316 0.66 0.709939
Target:  5'- aCGCGcuGGC-GACCGUGCaGCAgUGggugGCg -3'
miRNA:   3'- gGUGC--UCGaCUGGCACG-CGUgGCa---CG- -5'
19247 5' -57.4 NC_004684.1 + 5608 0.67 0.604684
Target:  5'- gC-CGAGCUGGC---GCGCAUgGUGCu -3'
miRNA:   3'- gGuGCUCGACUGgcaCGCGUGgCACG- -5'
19247 5' -57.4 NC_004684.1 + 5919 0.7 0.47183
Target:  5'- gCACGAccgGCUGGCCGcgcugGC-CACCGgGCg -3'
miRNA:   3'- gGUGCU---CGACUGGCa----CGcGUGGCaCG- -5'
19247 5' -57.4 NC_004684.1 + 6774 0.83 0.063383
Target:  5'- gCAUGGGCgacgugcgccgggUGACCGgccUGCGCACCGUGCg -3'
miRNA:   3'- gGUGCUCG-------------ACUGGC---ACGCGUGGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.