miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19247 5' -57.4 NC_004684.1 + 20642 0.66 0.67551
Target:  5'- gCGuCGAGCUGACCccagagguccgGCGCaagaucaGCCGUGg -3'
miRNA:   3'- gGU-GCUCGACUGGca---------CGCG-------UGGCACg -5'
19247 5' -57.4 NC_004684.1 + 9339 0.66 0.668142
Target:  5'- -gACGAGgaGGCCuccgGUGCGUcCCG-GCg -3'
miRNA:   3'- ggUGCUCgaCUGG----CACGCGuGGCaCG- -5'
19247 5' -57.4 NC_004684.1 + 44907 0.66 0.678662
Target:  5'- gCACGuuGGCgu-CgGUGCGCGCCGgGUa -3'
miRNA:   3'- gGUGC--UCGacuGgCACGCGUGGCaCG- -5'
19247 5' -57.4 NC_004684.1 + 46687 0.66 0.668142
Target:  5'- -uGCGguGGCgGugCGgugGCGCGCCcuGUGCg -3'
miRNA:   3'- ggUGC--UCGaCugGCa--CGCGUGG--CACG- -5'
19247 5' -57.4 NC_004684.1 + 13151 0.66 0.65759
Target:  5'- cUCGCGucGCUGACgCGUgacGCGCACC-UGg -3'
miRNA:   3'- -GGUGCu-CGACUG-GCA---CGCGUGGcACg -5'
19247 5' -57.4 NC_004684.1 + 19838 0.66 0.678662
Target:  5'- aCgGCGGcGCauGCCGguugccGCGCACCGUGg -3'
miRNA:   3'- -GgUGCU-CGacUGGCa-----CGCGUGGCACg -5'
19247 5' -57.4 NC_004684.1 + 23653 0.66 0.689142
Target:  5'- aCCGCu-GCUGACCGgGUaCACCGacgGCc -3'
miRNA:   3'- -GGUGcuCGACUGGCaCGcGUGGCa--CG- -5'
19247 5' -57.4 NC_004684.1 + 51675 0.66 0.699571
Target:  5'- gCCACGAGCcuccagccauuUGACCa-GCGCcggaccuuuACCgGUGCc -3'
miRNA:   3'- -GGUGCUCG-----------ACUGGcaCGCG---------UGG-CACG- -5'
19247 5' -57.4 NC_004684.1 + 9592 0.66 0.699571
Target:  5'- uCCGUG-GCUGGgacagcaugcUCGaggaGCGCGCCGUGCa -3'
miRNA:   3'- -GGUGCuCGACU----------GGCa---CGCGUGGCACG- -5'
19247 5' -57.4 NC_004684.1 + 8535 0.66 0.689142
Target:  5'- gUCGCG-GCUGAUCGgcaacgGCGUgguguUCGUGCc -3'
miRNA:   3'- -GGUGCuCGACUGGCa-----CGCGu----GGCACG- -5'
19247 5' -57.4 NC_004684.1 + 27329 0.66 0.709939
Target:  5'- aCCGCacGCUGACCaacGaCGagaGCCGUGCg -3'
miRNA:   3'- -GGUGcuCGACUGGca-C-GCg--UGGCACG- -5'
19247 5' -57.4 NC_004684.1 + 18399 0.66 0.699571
Target:  5'- gCACGAccuacuacuucgGCgGcCCGgcggGCGCACCG-GCg -3'
miRNA:   3'- gGUGCU------------CGaCuGGCa---CGCGUGGCaCG- -5'
19247 5' -57.4 NC_004684.1 + 10023 0.66 0.709939
Target:  5'- gCCGCGcGCcGACCGggaGCGCAUCaucGCc -3'
miRNA:   3'- -GGUGCuCGaCUGGCa--CGCGUGGca-CG- -5'
19247 5' -57.4 NC_004684.1 + 10757 0.66 0.699571
Target:  5'- -aGCGAGCaGGCaaCGUGCGUGCCc-GCg -3'
miRNA:   3'- ggUGCUCGaCUG--GCACGCGUGGcaCG- -5'
19247 5' -57.4 NC_004684.1 + 41889 0.66 0.699571
Target:  5'- cCCGCGAcaugaacgcGCUGGCCGaccgGaCGaCAUCGUGg -3'
miRNA:   3'- -GGUGCU---------CGACUGGCa---C-GC-GUGGCACg -5'
19247 5' -57.4 NC_004684.1 + 12906 0.66 0.668142
Target:  5'- gCCGCcAGCgguGCCG-GUGCGCCGUcgGCc -3'
miRNA:   3'- -GGUGcUCGac-UGGCaCGCGUGGCA--CG- -5'
19247 5' -57.4 NC_004684.1 + 15566 0.66 0.653362
Target:  5'- aCCAuCGAgaaGCUGACCcgcgagaaggggGCGCGCUcgGUGCg -3'
miRNA:   3'- -GGU-GCU---CGACUGGca----------CGCGUGG--CACG- -5'
19247 5' -57.4 NC_004684.1 + 11365 0.66 0.709939
Target:  5'- cCCGCGAGgUG-CCGguggugGCGUccAUCGUGg -3'
miRNA:   3'- -GGUGCUCgACuGGCa-----CGCG--UGGCACg -5'
19247 5' -57.4 NC_004684.1 + 3252 0.66 0.65759
Target:  5'- aCCACGcuGCUGGCCuggccggacaucGUGgaCGCACUGcUGCc -3'
miRNA:   3'- -GGUGCu-CGACUGG------------CAC--GCGUGGC-ACG- -5'
19247 5' -57.4 NC_004684.1 + 251 0.66 0.699571
Target:  5'- aCAcCGAGCUGAUCGccaacagccUGCGCACgCaugGCc -3'
miRNA:   3'- gGU-GCUCGACUGGC---------ACGCGUG-Gca-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.