miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19249 3' -60.1 NC_004684.1 + 28104 0.66 0.571242
Target:  5'- nCCGGGUGgugcgguucgaGGCCUugcuGguGGCCUGCACGc -3'
miRNA:   3'- -GGCUCGCa----------CUGGG----CguCUGGGCGUGC- -5'
19249 3' -60.1 NC_004684.1 + 16929 0.66 0.540793
Target:  5'- cCCGAacgcauGCGUGcguucAUCCGCgAGGCCUGCaaGCGg -3'
miRNA:   3'- -GGCU------CGCAC-----UGGGCG-UCUGGGCG--UGC- -5'
19249 3' -60.1 NC_004684.1 + 41149 0.66 0.571242
Target:  5'- uCUGGG-GU-ACgCCGCgccGGACCCGCGCGc -3'
miRNA:   3'- -GGCUCgCAcUG-GGCG---UCUGGGCGUGC- -5'
19249 3' -60.1 NC_004684.1 + 16745 0.66 0.571242
Target:  5'- aCCGAGCGcGGCUgGCcuGGAaCUCGCGgGg -3'
miRNA:   3'- -GGCUCGCaCUGGgCG--UCU-GGGCGUgC- -5'
19249 3' -60.1 NC_004684.1 + 5894 0.66 0.581488
Target:  5'- aCCGGGUGgcggcggcgcUGAUCgCGCAcGACCgGCugGc -3'
miRNA:   3'- -GGCUCGC----------ACUGG-GCGU-CUGGgCGugC- -5'
19249 3' -60.1 NC_004684.1 + 4505 0.66 0.571242
Target:  5'- gCCGAGC-UGGCggccaCCGUGGACCCGgGg- -3'
miRNA:   3'- -GGCUCGcACUG-----GGCGUCUGGGCgUgc -5'
19249 3' -60.1 NC_004684.1 + 25884 0.66 0.571242
Target:  5'- gCCGGGCagaacgucagcgGUGACCUGCuGuCCgGCAUc -3'
miRNA:   3'- -GGCUCG------------CACUGGGCGuCuGGgCGUGc -5'
19249 3' -60.1 NC_004684.1 + 29107 0.66 0.561039
Target:  5'- -gGAGcCGUGAgCUGCgccAGACCaGCACGu -3'
miRNA:   3'- ggCUC-GCACUgGGCG---UCUGGgCGUGC- -5'
19249 3' -60.1 NC_004684.1 + 57617 0.66 0.571242
Target:  5'- aCGAGCGguacgGccagccACCCGguGACCuCGCGu- -3'
miRNA:   3'- gGCUCGCa----C------UGGGCguCUGG-GCGUgc -5'
19249 3' -60.1 NC_004684.1 + 18109 0.66 0.581488
Target:  5'- aCCGAGCGcgaGGCCgGUguGGACaCCGC-Ca -3'
miRNA:   3'- -GGCUCGCa--CUGGgCG--UCUG-GGCGuGc -5'
19249 3' -60.1 NC_004684.1 + 48917 0.66 0.581488
Target:  5'- aCGuGCG-GGUCCGCAGGCCCGg--- -3'
miRNA:   3'- gGCuCGCaCUGGGCGUCUGGGCgugc -5'
19249 3' -60.1 NC_004684.1 + 29400 0.66 0.557988
Target:  5'- gCCGAGgacaaggccaucaaCGUcGACCCcaucgugcGCccGGACCCGCugGg -3'
miRNA:   3'- -GGCUC--------------GCA-CUGGG--------CG--UCUGGGCGugC- -5'
19249 3' -60.1 NC_004684.1 + 53759 0.66 0.568176
Target:  5'- aCCGAG-GUGGugaugguggucgggUCC-CAGACCgGCGCGg -3'
miRNA:   3'- -GGCUCgCACU--------------GGGcGUCUGGgCGUGC- -5'
19249 3' -60.1 NC_004684.1 + 58327 0.66 0.571242
Target:  5'- gCCGGGUcaUGgcgcGCCCGguGGCCCuGCugGc -3'
miRNA:   3'- -GGCUCGc-AC----UGGGCguCUGGG-CGugC- -5'
19249 3' -60.1 NC_004684.1 + 12744 0.66 0.550888
Target:  5'- gCCGAG-GUcGACgCC-CucuuGGCCCGCGCGg -3'
miRNA:   3'- -GGCUCgCA-CUG-GGcGu---CUGGGCGUGC- -5'
19249 3' -60.1 NC_004684.1 + 49525 0.66 0.550888
Target:  5'- gCCcAGCGUGcACCCgGCGGugU-GCGCGg -3'
miRNA:   3'- -GGcUCGCAC-UGGG-CGUCugGgCGUGC- -5'
19249 3' -60.1 NC_004684.1 + 41861 0.66 0.550888
Target:  5'- cUCG-GCGUGGuCUgguacuggaCGCAGGCCCGCgACa -3'
miRNA:   3'- -GGCuCGCACU-GG---------GCGUCUGGGCG-UGc -5'
19249 3' -60.1 NC_004684.1 + 42853 0.66 0.571242
Target:  5'- aCGAGCGcgguggGGCCaacCAGGCCgcCGCACGc -3'
miRNA:   3'- gGCUCGCa-----CUGGgc-GUCUGG--GCGUGC- -5'
19249 3' -60.1 NC_004684.1 + 15525 0.66 0.550888
Target:  5'- gCCGGGCGcuggaggcgcUGAUCCGCguugguGGACCgGCGa- -3'
miRNA:   3'- -GGCUCGC----------ACUGGGCG------UCUGGgCGUgc -5'
19249 3' -60.1 NC_004684.1 + 15869 0.66 0.581488
Target:  5'- aUCGAGCacGUGGCCgccaGCGGcCCUGUGCa -3'
miRNA:   3'- -GGCUCG--CACUGGg---CGUCuGGGCGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.