miRNA display CGI


Results 1 - 20 of 112 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19249 3' -60.1 NC_004684.1 + 59229 1.09 0.000559
Target:  5'- gCCGAGCGUGACCCGCAGACCCGCACGc -3'
miRNA:   3'- -GGCUCGCACUGGGCGUCUGGGCGUGC- -5'
19249 3' -60.1 NC_004684.1 + 18470 0.82 0.049409
Target:  5'- aCGAGgcCG-GGCCUGCGGACCCGCACGu -3'
miRNA:   3'- gGCUC--GCaCUGGGCGUCUGGGCGUGC- -5'
19249 3' -60.1 NC_004684.1 + 7302 0.81 0.06674
Target:  5'- uUCGGG-GUGGCCCGgugaAGGCCCGCACGg -3'
miRNA:   3'- -GGCUCgCACUGGGCg---UCUGGGCGUGC- -5'
19249 3' -60.1 NC_004684.1 + 28396 0.8 0.072405
Target:  5'- gCCGuGCGUGACgCCGguguuGGACCCGCGCGc -3'
miRNA:   3'- -GGCuCGCACUG-GGCg----UCUGGGCGUGC- -5'
19249 3' -60.1 NC_004684.1 + 66429 0.79 0.089856
Target:  5'- cCCgGAGuCGccaaUGACCCGCAGGCCCGCgaaGCGa -3'
miRNA:   3'- -GG-CUC-GC----ACUGGGCGUCUGGGCG---UGC- -5'
19249 3' -60.1 NC_004684.1 + 24495 0.78 0.100017
Target:  5'- gCCGGGgGcgGugCCGCAGGgCCGCGCGu -3'
miRNA:   3'- -GGCUCgCa-CugGGCGUCUgGGCGUGC- -5'
19249 3' -60.1 NC_004684.1 + 12074 0.76 0.133804
Target:  5'- gCCGAGCGcGACgaggUGCuGGCCCGCGCGg -3'
miRNA:   3'- -GGCUCGCaCUGg---GCGuCUGGGCGUGC- -5'
19249 3' -60.1 NC_004684.1 + 32551 0.76 0.148514
Target:  5'- gCCGGGCGaUGACCUGgAGAUUCGgGCGg -3'
miRNA:   3'- -GGCUCGC-ACUGGGCgUCUGGGCgUGC- -5'
19249 3' -60.1 NC_004684.1 + 57249 0.75 0.164682
Target:  5'- cCUGGGCGggcGGCaCCGUcGGCCCGCACa -3'
miRNA:   3'- -GGCUCGCa--CUG-GGCGuCUGGGCGUGc -5'
19249 3' -60.1 NC_004684.1 + 65813 0.74 0.201813
Target:  5'- aCCGGGCagGUGACCCGgAGGCaCCG-GCGg -3'
miRNA:   3'- -GGCUCG--CACUGGGCgUCUG-GGCgUGC- -5'
19249 3' -60.1 NC_004684.1 + 8417 0.73 0.21217
Target:  5'- uCCGuGUGUGgaACCCGCGcGCCCGC-CGg -3'
miRNA:   3'- -GGCuCGCAC--UGGGCGUcUGGGCGuGC- -5'
19249 3' -60.1 NC_004684.1 + 28070 0.73 0.222429
Target:  5'- cCCGgcGGUGUGGCcgggccgCCGCGcGACCCGCACc -3'
miRNA:   3'- -GGC--UCGCACUG-------GGCGU-CUGGGCGUGc -5'
19249 3' -60.1 NC_004684.1 + 21969 0.73 0.222981
Target:  5'- uCCGAcuuGCGUGGUgaGCuGACCCGCGCGg -3'
miRNA:   3'- -GGCU---CGCACUGggCGuCUGGGCGUGC- -5'
19249 3' -60.1 NC_004684.1 + 205 0.72 0.240071
Target:  5'- gCGAGacCGUGACCCGCAcGuCCgGCACc -3'
miRNA:   3'- gGCUC--GCACUGGGCGU-CuGGgCGUGc -5'
19249 3' -60.1 NC_004684.1 + 41502 0.72 0.240072
Target:  5'- aCCGGGUGUccauGGCCCGCuacgAGGCCCugGCACc -3'
miRNA:   3'- -GGCUCGCA----CUGGGCG----UCUGGG--CGUGc -5'
19249 3' -60.1 NC_004684.1 + 2165 0.72 0.240072
Target:  5'- cUCG-GCGUugacggucauGGCCCGCgaGGugCCGCACGg -3'
miRNA:   3'- -GGCuCGCA----------CUGGGCG--UCugGGCGUGC- -5'
19249 3' -60.1 NC_004684.1 + 28182 0.72 0.245408
Target:  5'- gCGAGCGguaccccGACCCcuucuggGCGGugCCGCugGa -3'
miRNA:   3'- gGCUCGCa------CUGGG-------CGUCugGGCGugC- -5'
19249 3' -60.1 NC_004684.1 + 30088 0.72 0.252064
Target:  5'- aCCGAcGCcgaaugGGCCCGCAGuguggagcaacGCCUGCGCGa -3'
miRNA:   3'- -GGCU-CGca----CUGGGCGUC-----------UGGGCGUGC- -5'
19249 3' -60.1 NC_004684.1 + 19458 0.72 0.252064
Target:  5'- cCCGGGCGg----CGguGGCCCGCGCGa -3'
miRNA:   3'- -GGCUCGCacuggGCguCUGGGCGUGC- -5'
19249 3' -60.1 NC_004684.1 + 10769 0.72 0.258242
Target:  5'- aCGuGCGUG-CCCGCGacACCCGCgACGg -3'
miRNA:   3'- gGCuCGCACuGGGCGUc-UGGGCG-UGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.