miRNA display CGI


Results 1 - 20 of 112 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19249 3' -60.1 NC_004684.1 + 205 0.72 0.240071
Target:  5'- gCGAGacCGUGACCCGCAcGuCCgGCACc -3'
miRNA:   3'- gGCUC--GCACUGGGCGU-CuGGgCGUGc -5'
19249 3' -60.1 NC_004684.1 + 525 0.67 0.491369
Target:  5'- aCCG-GCGcUGACgUGCuGGCCaGCGCGg -3'
miRNA:   3'- -GGCuCGC-ACUGgGCGuCUGGgCGUGC- -5'
19249 3' -60.1 NC_004684.1 + 778 0.67 0.50012
Target:  5'- gCCGAGgcacCGUGAaugauggcccucaCCUGCAccucgccguggcGGCCCGCAUGg -3'
miRNA:   3'- -GGCUC----GCACU-------------GGGCGU------------CUGGGCGUGC- -5'
19249 3' -60.1 NC_004684.1 + 1413 0.7 0.342191
Target:  5'- aCGGGCGgcUGAgCCUGCGcGACCCGCuguccACGa -3'
miRNA:   3'- gGCUCGC--ACU-GGGCGU-CUGGGCG-----UGC- -5'
19249 3' -60.1 NC_004684.1 + 1535 0.66 0.530761
Target:  5'- uCCGAG-GUGGCCaccaGCGGcCCC-CACa -3'
miRNA:   3'- -GGCUCgCACUGGg---CGUCuGGGcGUGc -5'
19249 3' -60.1 NC_004684.1 + 2165 0.72 0.240072
Target:  5'- cUCG-GCGUugacggucauGGCCCGCgaGGugCCGCACGg -3'
miRNA:   3'- -GGCuCGCA----------CUGGGCG--UCugGGCGUGC- -5'
19249 3' -60.1 NC_004684.1 + 2402 0.7 0.326927
Target:  5'- gCCGcuGGC--GAgCCGCAGACCCGCgucGCGg -3'
miRNA:   3'- -GGC--UCGcaCUgGGCGUCUGGGCG---UGC- -5'
19249 3' -60.1 NC_004684.1 + 3663 0.71 0.297932
Target:  5'- gCCGGGUcaucguacgGUGGCCCgGCAccgccuCCCGCACGa -3'
miRNA:   3'- -GGCUCG---------CACUGGG-CGUcu----GGGCGUGC- -5'
19249 3' -60.1 NC_004684.1 + 3859 0.66 0.550887
Target:  5'- gCCGAGCGccacGCCCGC-GAgCUGCgACGc -3'
miRNA:   3'- -GGCUCGCac--UGGGCGuCUgGGCG-UGC- -5'
19249 3' -60.1 NC_004684.1 + 4505 0.66 0.571242
Target:  5'- gCCGAGC-UGGCggccaCCGUGGACCCGgGg- -3'
miRNA:   3'- -GGCUCGcACUG-----GGCGUCUGGGCgUgc -5'
19249 3' -60.1 NC_004684.1 + 4532 0.7 0.334496
Target:  5'- uCCgGGGCGaGAcCCCGgAGGCCCGCuACa -3'
miRNA:   3'- -GG-CUCGCaCU-GGGCgUCUGGGCG-UGc -5'
19249 3' -60.1 NC_004684.1 + 5076 0.71 0.312174
Target:  5'- uCCG-GCGaugaGAUCgCGgAGGCCCGCGCGg -3'
miRNA:   3'- -GGCuCGCa---CUGG-GCgUCUGGGCGUGC- -5'
19249 3' -60.1 NC_004684.1 + 5463 0.71 0.297932
Target:  5'- cCCG-GCGgGugCCGU-GGCCCGCACc -3'
miRNA:   3'- -GGCuCGCaCugGGCGuCUGGGCGUGc -5'
19249 3' -60.1 NC_004684.1 + 5543 0.67 0.520797
Target:  5'- cCCGccaGGCuGUGACCCuugcccucacgGUGGGCgCGCGCGa -3'
miRNA:   3'- -GGC---UCG-CACUGGG-----------CGUCUGgGCGUGC- -5'
19249 3' -60.1 NC_004684.1 + 5894 0.66 0.581488
Target:  5'- aCCGGGUGgcggcggcgcUGAUCgCGCAcGACCgGCugGc -3'
miRNA:   3'- -GGCUCGC----------ACUGG-GCGU-CUGGgCGugC- -5'
19249 3' -60.1 NC_004684.1 + 6789 0.68 0.435002
Target:  5'- gCCGGGUGaccGGCCUGCGcACCgUGCGCGg -3'
miRNA:   3'- -GGCUCGCa--CUGGGCGUcUGG-GCGUGC- -5'
19249 3' -60.1 NC_004684.1 + 7302 0.81 0.06674
Target:  5'- uUCGGG-GUGGCCCGgugaAGGCCCGCACGg -3'
miRNA:   3'- -GGCUCgCACUGGGCg---UCUGGGCGUGC- -5'
19249 3' -60.1 NC_004684.1 + 7327 0.67 0.49137
Target:  5'- gCCGAcGCGUG-CUCGguGugcaACCCGC-CGg -3'
miRNA:   3'- -GGCU-CGCACuGGGCguC----UGGGCGuGC- -5'
19249 3' -60.1 NC_004684.1 + 8417 0.73 0.21217
Target:  5'- uCCGuGUGUGgaACCCGCGcGCCCGC-CGg -3'
miRNA:   3'- -GGCuCGCAC--UGGGCGUcUGGGCGuGC- -5'
19249 3' -60.1 NC_004684.1 + 8998 0.69 0.408254
Target:  5'- gCCGGGCcaaGGCCuccacgCGCGGugCCGUGCGg -3'
miRNA:   3'- -GGCUCGca-CUGG------GCGUCugGGCGUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.