miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19250 3' -61.3 NC_004684.1 + 59762 1.09 0.000348
Target:  5'- gCCCGCCACGGCGAGCUGGCUCUCGACc -3'
miRNA:   3'- -GGGCGGUGCCGCUCGACCGAGAGCUG- -5'
19250 3' -61.3 NC_004684.1 + 23424 0.78 0.078125
Target:  5'- gCCCGCgCACGGCuGAuGCUcGGC-CUCGACg -3'
miRNA:   3'- -GGGCG-GUGCCG-CU-CGA-CCGaGAGCUG- -5'
19250 3' -61.3 NC_004684.1 + 54498 0.76 0.096951
Target:  5'- aCCGCUgGCGGCGAGCgcaGGCUCccCGGCg -3'
miRNA:   3'- gGGCGG-UGCCGCUCGa--CCGAGa-GCUG- -5'
19250 3' -61.3 NC_004684.1 + 28770 0.75 0.12787
Target:  5'- uCCCGCUccaggucaGCGGCaugccacccgguuccGAGCUGGUgCUCGACg -3'
miRNA:   3'- -GGGCGG--------UGCCG---------------CUCGACCGaGAGCUG- -5'
19250 3' -61.3 NC_004684.1 + 23213 0.74 0.140187
Target:  5'- gCCGCCgguggcgACGGCGGGUuccugaaaUGGCUCcgCGACg -3'
miRNA:   3'- gGGCGG-------UGCCGCUCG--------ACCGAGa-GCUG- -5'
19250 3' -61.3 NC_004684.1 + 44664 0.73 0.161749
Target:  5'- aCCCGCUgcuGCGGCGGcgcgaugccgaugucGCUGGCg-UCGACu -3'
miRNA:   3'- -GGGCGG---UGCCGCU---------------CGACCGagAGCUG- -5'
19250 3' -61.3 NC_004684.1 + 11593 0.73 0.167265
Target:  5'- gCCCGCCggugcgccuggacgACGGCaccGAGCUGGCcgUCGGCc -3'
miRNA:   3'- -GGGCGG--------------UGCCG---CUCGACCGagAGCUG- -5'
19250 3' -61.3 NC_004684.1 + 61172 0.72 0.206595
Target:  5'- aCCCgGCCAgguCGGCgGGGUUGGUggcCUCGGCg -3'
miRNA:   3'- -GGG-CGGU---GCCG-CUCGACCGa--GAGCUG- -5'
19250 3' -61.3 NC_004684.1 + 19589 0.72 0.211311
Target:  5'- aCCUGCCcagucCGGCGGccgagguGCUGGCggugacgCUCGGCg -3'
miRNA:   3'- -GGGCGGu----GCCGCU-------CGACCGa------GAGCUG- -5'
19250 3' -61.3 NC_004684.1 + 26408 0.71 0.239806
Target:  5'- gCCGCCAcCGGCGcGCUGGCag-CGGg -3'
miRNA:   3'- gGGCGGU-GCCGCuCGACCGagaGCUg -5'
19250 3' -61.3 NC_004684.1 + 9851 0.71 0.239806
Target:  5'- aCCGCCGcCGGUGAGCUGccGCcggaUCcCGACg -3'
miRNA:   3'- gGGCGGU-GCCGCUCGAC--CG----AGaGCUG- -5'
19250 3' -61.3 NC_004684.1 + 66589 0.71 0.240395
Target:  5'- gCCGCCACGGCGAGgUgcaggugagGGCcaucauucacggugcCUCGGCg -3'
miRNA:   3'- gGGCGGUGCCGCUCgA---------CCGa--------------GAGCUG- -5'
19250 3' -61.3 NC_004684.1 + 21637 0.71 0.245756
Target:  5'- gCCUGCCAac-CGAGCagGcGCUCUCGGCg -3'
miRNA:   3'- -GGGCGGUgccGCUCGa-C-CGAGAGCUG- -5'
19250 3' -61.3 NC_004684.1 + 28003 0.71 0.24817
Target:  5'- aCCCGaCGCGGUGAucgggccguacaaggGCUGGUUCccCGACa -3'
miRNA:   3'- -GGGCgGUGCCGCU---------------CGACCGAGa-GCUG- -5'
19250 3' -61.3 NC_004684.1 + 30178 0.71 0.24817
Target:  5'- gCCGUCgGCGGCGAGCUGGUggccaccaaaccCGGCg -3'
miRNA:   3'- gGGCGG-UGCCGCUCGACCGaga---------GCUG- -5'
19250 3' -61.3 NC_004684.1 + 18620 0.7 0.251828
Target:  5'- gCCCGCC-CGGCGucggcaaguccAGCgUGGCgCUgGACa -3'
miRNA:   3'- -GGGCGGuGCCGC-----------UCG-ACCGaGAgCUG- -5'
19250 3' -61.3 NC_004684.1 + 30634 0.7 0.258024
Target:  5'- aCCGCgACGGCGGGCcagaacGGCaUC-CGGCu -3'
miRNA:   3'- gGGCGgUGCCGCUCGa-----CCG-AGaGCUG- -5'
19250 3' -61.3 NC_004684.1 + 9666 0.7 0.264343
Target:  5'- gCCGCCugGGCGuGCcaccaguccuUGGCcaUCUCGuuGCg -3'
miRNA:   3'- gGGCGGugCCGCuCG----------ACCG--AGAGC--UG- -5'
19250 3' -61.3 NC_004684.1 + 66477 0.7 0.264343
Target:  5'- gCCGCCACccgguGGCG-GCUaGGC-CUUGGCg -3'
miRNA:   3'- gGGCGGUG-----CCGCuCGA-CCGaGAGCUG- -5'
19250 3' -61.3 NC_004684.1 + 399 0.7 0.270788
Target:  5'- aCCGCCGUGGCGGGCaaGCUgggCGACu -3'
miRNA:   3'- gGGCGGUGCCGCUCGacCGAga-GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.