Results 1 - 20 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19250 | 3' | -61.3 | NC_004684.1 | + | 46007 | 0.69 | 0.334514 |
Target: 5'- aCCgGCCACGGUGcgcacgucguccAGCUuguccaGGUUCUUGAUg -3' miRNA: 3'- -GGgCGGUGCCGC------------UCGA------CCGAGAGCUG- -5' |
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19250 | 3' | -61.3 | NC_004684.1 | + | 66477 | 0.7 | 0.264343 |
Target: 5'- gCCGCCACccgguGGCG-GCUaGGC-CUUGGCg -3' miRNA: 3'- gGGCGGUG-----CCGCuCGA-CCGaGAGCUG- -5' |
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19250 | 3' | -61.3 | NC_004684.1 | + | 2451 | 0.7 | 0.277358 |
Target: 5'- gCCCGCCugGGCG-GCcag--CUCGGCg -3' miRNA: 3'- -GGGCGGugCCGCuCGaccgaGAGCUG- -5' |
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19250 | 3' | -61.3 | NC_004684.1 | + | 10048 | 0.7 | 0.284055 |
Target: 5'- aUCGCCACGcGUGAGCcgUGGUUUgaCGACa -3' miRNA: 3'- gGGCGGUGC-CGCUCG--ACCGAGa-GCUG- -5' |
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19250 | 3' | -61.3 | NC_004684.1 | + | 44629 | 0.69 | 0.29783 |
Target: 5'- -gCGCCGgGGgGAGCgGGUaCUCGGCc -3' miRNA: 3'- ggGCGGUgCCgCUCGaCCGaGAGCUG- -5' |
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19250 | 3' | -61.3 | NC_004684.1 | + | 6817 | 0.69 | 0.29783 |
Target: 5'- -aCGCCGuCGGCcuggagGAGCUGGC-CUaCGGCg -3' miRNA: 3'- ggGCGGU-GCCG------CUCGACCGaGA-GCUG- -5' |
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19250 | 3' | -61.3 | NC_004684.1 | + | 25494 | 0.69 | 0.29783 |
Target: 5'- aCCaaggGCCAggcgacCGGCGAGC-GGCuguUCUCGACc -3' miRNA: 3'- -GGg---CGGU------GCCGCUCGaCCG---AGAGCUG- -5' |
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19250 | 3' | -61.3 | NC_004684.1 | + | 62902 | 0.69 | 0.304196 |
Target: 5'- gUUGCCACGGCGGGCcaggcccUGGCcggUGACg -3' miRNA: 3'- gGGCGGUGCCGCUCG-------ACCGagaGCUG- -5' |
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19250 | 3' | -61.3 | NC_004684.1 | + | 42531 | 0.69 | 0.30491 |
Target: 5'- aCCGCCGugguCGGCGuGCUgacGGCgUUCGGCu -3' miRNA: 3'- gGGCGGU----GCCGCuCGA---CCGaGAGCUG- -5' |
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19250 | 3' | -61.3 | NC_004684.1 | + | 30634 | 0.7 | 0.258024 |
Target: 5'- aCCGCgACGGCGGGCcagaacGGCaUC-CGGCu -3' miRNA: 3'- gGGCGgUGCCGCUCGa-----CCG-AGaGCUG- -5' |
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19250 | 3' | -61.3 | NC_004684.1 | + | 30178 | 0.71 | 0.24817 |
Target: 5'- gCCGUCgGCGGCGAGCUGGUggccaccaaaccCGGCg -3' miRNA: 3'- gGGCGG-UGCCGCUCGACCGaga---------GCUG- -5' |
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19250 | 3' | -61.3 | NC_004684.1 | + | 21637 | 0.71 | 0.245756 |
Target: 5'- gCCUGCCAac-CGAGCagGcGCUCUCGGCg -3' miRNA: 3'- -GGGCGGUgccGCUCGa-C-CGAGAGCUG- -5' |
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19250 | 3' | -61.3 | NC_004684.1 | + | 28770 | 0.75 | 0.12787 |
Target: 5'- uCCCGCUccaggucaGCGGCaugccacccgguuccGAGCUGGUgCUCGACg -3' miRNA: 3'- -GGGCGG--------UGCCG---------------CUCGACCGaGAGCUG- -5' |
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19250 | 3' | -61.3 | NC_004684.1 | + | 23213 | 0.74 | 0.140187 |
Target: 5'- gCCGCCgguggcgACGGCGGGUuccugaaaUGGCUCcgCGACg -3' miRNA: 3'- gGGCGG-------UGCCGCUCG--------ACCGAGa-GCUG- -5' |
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19250 | 3' | -61.3 | NC_004684.1 | + | 44664 | 0.73 | 0.161749 |
Target: 5'- aCCCGCUgcuGCGGCGGcgcgaugccgaugucGCUGGCg-UCGACu -3' miRNA: 3'- -GGGCGG---UGCCGCU---------------CGACCGagAGCUG- -5' |
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19250 | 3' | -61.3 | NC_004684.1 | + | 11593 | 0.73 | 0.167265 |
Target: 5'- gCCCGCCggugcgccuggacgACGGCaccGAGCUGGCcgUCGGCc -3' miRNA: 3'- -GGGCGG--------------UGCCG---CUCGACCGagAGCUG- -5' |
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19250 | 3' | -61.3 | NC_004684.1 | + | 61172 | 0.72 | 0.206595 |
Target: 5'- aCCCgGCCAgguCGGCgGGGUUGGUggcCUCGGCg -3' miRNA: 3'- -GGG-CGGU---GCCG-CUCGACCGa--GAGCUG- -5' |
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19250 | 3' | -61.3 | NC_004684.1 | + | 19589 | 0.72 | 0.211311 |
Target: 5'- aCCUGCCcagucCGGCGGccgagguGCUGGCggugacgCUCGGCg -3' miRNA: 3'- -GGGCGGu----GCCGCU-------CGACCGa------GAGCUG- -5' |
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19250 | 3' | -61.3 | NC_004684.1 | + | 9851 | 0.71 | 0.239806 |
Target: 5'- aCCGCCGcCGGUGAGCUGccGCcggaUCcCGACg -3' miRNA: 3'- gGGCGGU-GCCGCUCGAC--CG----AGaGCUG- -5' |
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19250 | 3' | -61.3 | NC_004684.1 | + | 26408 | 0.71 | 0.239806 |
Target: 5'- gCCGCCAcCGGCGcGCUGGCag-CGGg -3' miRNA: 3'- gGGCGGU-GCCGCuCGACCGagaGCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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