miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19250 3' -61.3 NC_004684.1 + 399 0.7 0.270788
Target:  5'- aCCGCCGUGGCGGGCaaGCUgggCGACu -3'
miRNA:   3'- gGGCGGUGCCGCUCGacCGAga-GCUG- -5'
19250 3' -61.3 NC_004684.1 + 1682 0.66 0.463239
Target:  5'- gCCCaCCA-GGcCGAGCUGGCgcgcaUCGAg -3'
miRNA:   3'- -GGGcGGUgCC-GCUCGACCGag---AGCUg -5'
19250 3' -61.3 NC_004684.1 + 2451 0.7 0.277358
Target:  5'- gCCCGCCugGGCG-GCcag--CUCGGCg -3'
miRNA:   3'- -GGGCGGugCCGCuCGaccgaGAGCUG- -5'
19250 3' -61.3 NC_004684.1 + 3803 0.67 0.408544
Target:  5'- gCCGCCuuGGCGGucaaggaucuGCUGGgCgcgUUCGGCg -3'
miRNA:   3'- gGGCGGugCCGCU----------CGACC-Ga--GAGCUG- -5'
19250 3' -61.3 NC_004684.1 + 4014 0.67 0.435396
Target:  5'- gCCGCCAuCGGCuGGCgcgucGGCcgCUCGGu -3'
miRNA:   3'- gGGCGGU-GCCGcUCGa----CCGa-GAGCUg -5'
19250 3' -61.3 NC_004684.1 + 4185 0.66 0.457595
Target:  5'- -gCGCC-CGGCGGGCgcggUGGUUCUgaucaccgccagccaCGACu -3'
miRNA:   3'- ggGCGGuGCCGCUCG----ACCGAGA---------------GCUG- -5'
19250 3' -61.3 NC_004684.1 + 4629 0.66 0.453853
Target:  5'- gCCCGCCGCaGGaGGGCaaguccaccaUGGC-CUCGGu -3'
miRNA:   3'- -GGGCGGUG-CCgCUCG----------ACCGaGAGCUg -5'
19250 3' -61.3 NC_004684.1 + 5390 0.66 0.463239
Target:  5'- cCCCGUCgcgauugugcGCGGCGGGUgcgggUGGCUCaugguguacacCGACg -3'
miRNA:   3'- -GGGCGG----------UGCCGCUCG-----ACCGAGa----------GCUG- -5'
19250 3' -61.3 NC_004684.1 + 5591 0.68 0.382751
Target:  5'- aCCCGCCugccgACGGggcCGAGCUGGCg--CG-Ca -3'
miRNA:   3'- -GGGCGG-----UGCC---GCUCGACCGagaGCuG- -5'
19250 3' -61.3 NC_004684.1 + 6817 0.69 0.29783
Target:  5'- -aCGCCGuCGGCcuggagGAGCUGGC-CUaCGGCg -3'
miRNA:   3'- ggGCGGU-GCCG------CUCGACCGaGA-GCUG- -5'
19250 3' -61.3 NC_004684.1 + 7544 0.69 0.334514
Target:  5'- gCCGCCgugGCGGCGuuCUGGUUCgccuacacCGGCa -3'
miRNA:   3'- gGGCGG---UGCCGCucGACCGAGa-------GCUG- -5'
19250 3' -61.3 NC_004684.1 + 7638 0.7 0.284055
Target:  5'- gCUCGCCGUGGCGGGCgUGGUgaccgggUCGGCg -3'
miRNA:   3'- -GGGCGGUGCCGCUCG-ACCGag-----AGCUG- -5'
19250 3' -61.3 NC_004684.1 + 8746 0.67 0.432665
Target:  5'- gCCGCCGCgcccGGCGAGCUGaucaagaacgucacGCacuugaagUUCGACa -3'
miRNA:   3'- gGGCGGUG----CCGCUCGAC--------------CGa-------GAGCUG- -5'
19250 3' -61.3 NC_004684.1 + 9142 0.67 0.426331
Target:  5'- aCCGCCuCGGCGcGGCaGGUg--CGGCa -3'
miRNA:   3'- gGGCGGuGCCGC-UCGaCCGagaGCUG- -5'
19250 3' -61.3 NC_004684.1 + 9442 0.67 0.426331
Target:  5'- aCCaGCCGCaGCGAGCaccgcaGGCggUCGGCa -3'
miRNA:   3'- gGG-CGGUGcCGCUCGa-----CCGagAGCUG- -5'
19250 3' -61.3 NC_004684.1 + 9666 0.7 0.264343
Target:  5'- gCCGCCugGGCGuGCcaccaguccuUGGCcaUCUCGuuGCg -3'
miRNA:   3'- gGGCGGugCCGCuCG----------ACCG--AGAGC--UG- -5'
19250 3' -61.3 NC_004684.1 + 9851 0.71 0.239806
Target:  5'- aCCGCCGcCGGUGAGCUGccGCcggaUCcCGACg -3'
miRNA:   3'- gGGCGGU-GCCGCUCGAC--CG----AGaGCUG- -5'
19250 3' -61.3 NC_004684.1 + 9962 0.67 0.391228
Target:  5'- gUCGCCACGGUcauGgaGGCU-UCGACg -3'
miRNA:   3'- gGGCGGUGCCGcu-CgaCCGAgAGCUG- -5'
19250 3' -61.3 NC_004684.1 + 10048 0.7 0.284055
Target:  5'- aUCGCCACGcGUGAGCcgUGGUUUgaCGACa -3'
miRNA:   3'- gGGCGGUGC-CGCUCG--ACCGAGa-GCUG- -5'
19250 3' -61.3 NC_004684.1 + 10119 0.69 0.319455
Target:  5'- gCCGUCACaGGcCGAGCUGuGCgggC-CGACg -3'
miRNA:   3'- gGGCGGUG-CC-GCUCGAC-CGa--GaGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.