miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19251 3' -59.5 NC_004684.1 + 59953 1.12 0.000331
Target:  5'- gCGUUGUGCUGGCGGCGCUCGUGCCGCa -3'
miRNA:   3'- -GCAACACGACCGCCGCGAGCACGGCG- -5'
19251 3' -59.5 NC_004684.1 + 23209 0.79 0.082074
Target:  5'- gCGagGUGCUGGCGcGCGCcggguucaucgcCGUGCCGCa -3'
miRNA:   3'- -GCaaCACGACCGC-CGCGa-----------GCACGGCG- -5'
19251 3' -59.5 NC_004684.1 + 1062 0.79 0.084589
Target:  5'- gGUUGUgcugGCUGGCGGCGCUggaCGUgaucggugaccagGCCGCg -3'
miRNA:   3'- gCAACA----CGACCGCCGCGA---GCA-------------CGGCG- -5'
19251 3' -59.5 NC_004684.1 + 56711 0.77 0.108391
Target:  5'- gGggGUgaaGCUGGCGGUGCUgaUGCCGCg -3'
miRNA:   3'- gCaaCA---CGACCGCCGCGAgcACGGCG- -5'
19251 3' -59.5 NC_004684.1 + 7549 0.74 0.174866
Target:  5'- aCGcgGUGCUggaccggccccgGGUGGCGCUgGUGCgGCu -3'
miRNA:   3'- -GCaaCACGA------------CCGCCGCGAgCACGgCG- -5'
19251 3' -59.5 NC_004684.1 + 42541 0.74 0.193913
Target:  5'- uCGgcGUGCUGaCGGCGUUCGgcuucggcgugGCCGCc -3'
miRNA:   3'- -GCaaCACGACcGCCGCGAGCa----------CGGCG- -5'
19251 3' -59.5 NC_004684.1 + 19607 0.72 0.255827
Target:  5'- cCGagGUGCUGGCGGUgacGCUCGgcgacaCCGUg -3'
miRNA:   3'- -GCaaCACGACCGCCG---CGAGCac----GGCG- -5'
19251 3' -59.5 NC_004684.1 + 46683 0.72 0.262195
Target:  5'- gCGUUGcGgUGGCGGUGCg-GUGgCGCg -3'
miRNA:   3'- -GCAACaCgACCGCCGCGagCACgGCG- -5'
19251 3' -59.5 NC_004684.1 + 40166 0.71 0.266728
Target:  5'- aCGgccuUGCUGGCGGCgaagcucaugcgcuGCUCGcUGUCGCu -3'
miRNA:   3'- -GCaac-ACGACCGCCG--------------CGAGC-ACGGCG- -5'
19251 3' -59.5 NC_004684.1 + 7384 0.71 0.282071
Target:  5'- --cUGUGCUGGUGGaUGCgccCGcUGCUGCg -3'
miRNA:   3'- gcaACACGACCGCC-GCGa--GC-ACGGCG- -5'
19251 3' -59.5 NC_004684.1 + 8534 0.71 0.295975
Target:  5'- aGUcGcgGCUGaucggcaacggcGUGGUGUUCGUGCCGCa -3'
miRNA:   3'- gCAaCa-CGAC------------CGCCGCGAGCACGGCG- -5'
19251 3' -59.5 NC_004684.1 + 22371 0.71 0.295975
Target:  5'- gGUcGcGCUGGCGGUGgaCGUGCagGCg -3'
miRNA:   3'- gCAaCaCGACCGCCGCgaGCACGg-CG- -5'
19251 3' -59.5 NC_004684.1 + 7600 0.71 0.303124
Target:  5'- ----aUGCUGGCGGUGUUCGccuccugGCCGg -3'
miRNA:   3'- gcaacACGACCGCCGCGAGCa------CGGCg -5'
19251 3' -59.5 NC_004684.1 + 34869 0.7 0.310405
Target:  5'- aCGUUGUGgUGGCGGUgGCccggacgGUGCCGa -3'
miRNA:   3'- -GCAACACgACCGCCG-CGag-----CACGGCg -5'
19251 3' -59.5 NC_004684.1 + 61501 0.7 0.310405
Target:  5'- -----gGC-GGCGGCGCUCGaUGCgCGCc -3'
miRNA:   3'- gcaacaCGaCCGCCGCGAGC-ACG-GCG- -5'
19251 3' -59.5 NC_004684.1 + 63063 0.7 0.317818
Target:  5'- -----gGUUGGUGGCgGCUacCGUGCCGCc -3'
miRNA:   3'- gcaacaCGACCGCCG-CGA--GCACGGCG- -5'
19251 3' -59.5 NC_004684.1 + 536 0.7 0.333043
Target:  5'- ---cGUGCUGGCcaGCGCggUCGagGCCGCc -3'
miRNA:   3'- gcaaCACGACCGc-CGCG--AGCa-CGGCG- -5'
19251 3' -59.5 NC_004684.1 + 19832 0.7 0.348795
Target:  5'- ---cGUGUgacGGCGGCGCaugcCGguUGCCGCg -3'
miRNA:   3'- gcaaCACGa--CCGCCGCGa---GC--ACGGCG- -5'
19251 3' -59.5 NC_004684.1 + 58339 0.69 0.373404
Target:  5'- cCGUga-GCUGGCuGGCG-UCGUGCCa- -3'
miRNA:   3'- -GCAacaCGACCG-CCGCgAGCACGGcg -5'
19251 3' -59.5 NC_004684.1 + 50660 0.69 0.381865
Target:  5'- gGggGUGCggaccaGGCGuGCGCcCGgUGCCGUg -3'
miRNA:   3'- gCaaCACGa-----CCGC-CGCGaGC-ACGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.